Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018274.1 Length=36847 Score E Sequences producing significant alignments: (Bits) Value seq3931 248 2e-61 seq8746 131 4e-26 seq1016 84.2 5e-12 >seq3931 Length=1953 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 1303 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 1362 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 1363 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 1422 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 1423 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 1482 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 1483 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 1542 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 1543 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 1602 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 1603 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 1662 Query 1761 CG 1762 || Sbjct 1663 CG 1664 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 116 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 175 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 176 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 235 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 236 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 295 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 296 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 355 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 356 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 415 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 416 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 471 >seq8746 Length=2069 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 9351 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9410 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 1750 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 1692 Query 9411 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9468 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 1691 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 1634 Query 9469 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9500 | || || |||| || ||||| ||||||| Sbjct 1633 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 95.1 bits (104), Expect = 3e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 9747 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTG 9806 || ||||||||||||||| | || || |||| || || ||||| || || ||| || Sbjct 1373 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1314 Query 9807 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9866 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 1313 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1254 Query 9867 CTGGTCGAACTCCAGCGCCTGGGCTGG 9893 |||| ||| | ||| |||||||| Sbjct 1253 CTGGCCGAGTTTGCCCGCTTGGGCTGG 1227 >seq1016 Length=5115 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11438 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11495 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 1150 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 1206 Query 11496 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11555 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 1207 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 1266 Query 11556 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11612 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 1267 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 1323 Query 11613 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11672 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 1324 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 1383 Query 11673 C 11673 | Sbjct 1384 C 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117749317709566