Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq1687 715 0.0 seq40 105 2e-18 seq4 91.5 4e-14 >seq1687 Length=800 Score = 715 bits (792), Expect = 0.0 Identities = 435/461 (94%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 37326 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGACCGAGTGGTAACGATGGTC 37385 ||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 37386 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGCCACG 37445 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 37446 GACACACCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 37505 | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 37506 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 37565 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 37566 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTCTATAACGTGGGCACAGGCAATT 37625 ||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 37626 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAGGGCGCATGTGATC 37685 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 37686 AGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACCCGTCGTG 37745 ||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 37746 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCA 37786 |||||||||||||| ||||||||||||| || |||||| || Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACA 478 Score = 176 bits (194), Expect = 1e-39 Identities = 195/261 (75%), Gaps = 23/261 (9%) Strand=Plus/Plus Query 37882 TAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 37941 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 482 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 541 Query 37942 ATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA---GCCACA---- 37994 |||||||||||||||||||||| ||||||||| |||||||| ||| |||| | Sbjct 542 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 601 Query 37995 --------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGACGTAGCAAAAC 38040 | |||| |||||||||||| ||| || ||||| || || || Sbjct 602 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 661 Query 38041 TCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGAAAGTCTCCGT 38099 | || | | ||| || |||||| | ||| |||| || || || || || ||| ||| Sbjct 662 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGT 720 Query 38100 GCTGATGTTTCTGCTGGTCGT 38120 | || |||| | ||||||||| Sbjct 721 GATGGTGTTGCCGCTGGTCGT 741 >seq40 Length=14228 Score = 105 bits (116), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 22060 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAG 22119 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 22120 GATTGTTATTCAGTGCCGATATTTACCTTT 22149 || || | |||| ||| | ||| || ||| Sbjct 3108 GA-TGCTGTTCATTGCTGCTATACACTTTT 3136 Score = 105 bits (116), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 30569 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 30628 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 10187 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 10246 Query 30629 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 30688 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 10247 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 10306 Query 30689 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 30748 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 10307 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 10366 Query 30749 CACTGGCATGGCACCAACCAAATGTTCTACCGCCAAAAACG 30789 || || || || | ||| |||||| | || |||| || Sbjct 10367 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 10407 >seq4 Length=38681 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 24939 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGTGGTTGGCTGCGGCGATA 24998 ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 33540 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGCTGCGGCGATA 33599 Query 24999 AAT 25001 || Sbjct 33600 TAT 33602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127141368479630