Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1687 955 0.0 seq2951 609 7e-170 seq25858 219 1e-52 seq40 105 2e-18 >seq1687 Length=800 Score = 955 bits (1058), Expect = 0.0 Identities = 633/702 (90%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 46300 GTGGCGGGGCTATTGCTATAGCATCTGTATTAATCACTGGCCCCGGTGGTAACGATGGTC 46359 ||||||| || |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 46360 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 46419 ||||||||||||| |||| |||||| || || | |||||||| | |||||| ||| | | Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 46420 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAATCCC 46479 | || || |||||||||||||||| ||||||||||||||| |||||||||||||| ||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 46480 TCCTGAATAAAGACCTTGTCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 46539 |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 46540 TACCGGAAACAACGCGAGGCGCCCTTTACTCGTTCGTCTACAACGTGGGCGCAGGTAATT 46599 |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 46600 TCAGAACATCGACGCTTCTTCGCAAAATAAATCAGGGTGATATCAAAGGCGCATGTGACC 46659 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 46660 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 46719 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 46720 AGATTGAGTGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 46779 |||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 497 Query 46780 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 46839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 557 Query 46840 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 46899 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 558 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 617 Query 46900 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 46959 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 618 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 677 Query 46960 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 47001 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 678 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq2951 Length=14634 Score = 609 bits (674), Expect = 7e-170 Identities = 758/1034 (73%), Gaps = 6/1034 (1%) Strand=Plus/Minus Query 24876 TTCAGCAGTAATTATGAGCTTTACGCTGATATGTCGAACCGGGTAATGACCACACTCGAG 24935 || ||||||||||||||||| || || || ||||| | |||||| ||| |||| || || Sbjct 8624 TTTAGCAGTAATTATGAGCTGTATGCCGACATGTCCAGCCGGGTGATGGCCACCCTGGAA 8565 Query 24936 GAGATGTCGCCGCGGGTAGAAATTTACAGCATTGATGAGGCTTTTTGTGATCTGACGGGG 24995 ||| | | ||||| ||||||||||| || |||||||| ||||| ||| | | || Sbjct 8564 GAGCTCACCCCGCGCTGCGAAATTTACAGTATCGATGAGGCCTTTTGCGATGTCAGCGGT 8505 Query 24996 ATACGAAGCTGCCGGGATCTGACAGATTTCGGGCGCGAGATAAGAGCGACGGTCCTGAAG 25055 | || ||| | |||||||| ||||| || ||||| || | || ||||| ||| || Sbjct 8504 GTGCGTCATTGCAGAGATCTGACCGATTTTGGCCGCGAAATCCGCGCCACGGTGCTGCAG 8445 Query 25056 CGCACGCACCTGACTGTCGGCGTAGGCATTGCCCAGACGAAAACCCTTGCCAAGCTGGCT 25115 || || || ||||| | ||||| ||||| |||| ||| |||||||| || |||||||| Sbjct 8444 CGTACCCATCTGACGCTGGGCGTTGGCATCGCCCCGACCAAAACCCTGGCGAAGCTGGCC 8385 Query 25116 AACCATGCTGCGAAAAAGTGGCAGCGCCAGACCGGCGGGGTGGTTGACTTGTCGAACATT 25175 ||||| || ||||| |||||| ||| ||||| |||||||| || |||||||| | Sbjct 8384 AACCACGCGGCGAAGCAGTGGCCGCGGCAGACGGGCGGGGTAGTGGACTTGTCCTGCCCG 8325 Query 25176 GACCGCCAGCGTCGGCTGCTGGCACTGATACCCGTAGAG-GATGTGTGGGGTGTCGGTAG 25234 | || ||||| |||| |||| ||| | || || ||| || || ||||| |||| | Sbjct 8324 CAGCGGCAGCGAAAGCTGATGGCGCTGCTGCCGGT-GAGCGAGGTCTGGGGCATCGGACG 8266 Query 25235 GCGTATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCTCTC--AGAG 25292 ||| ||| |||| ||||| | || ||||| ||| |||| || | || | |||| Sbjct 8265 GCGGATCGGCAAAAAGCTTGAAGCGATGGGGATCGGCACGGTACTCCAGCTGGCGGAGAG 8206 Query 25293 CAAAGCACCTGGATTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAG 25352 | | | | | |||||||||||||||| | ||||| || ||||||||||| |||||| Sbjct 8205 CGAT--ATCCGCTTTATCCGCAAGCACTTCACGGTGGTGCTCGAACGAACGGTACGGGAG 8148 Query 25353 CTGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGGAAATCGTC 25412 ||||| ||||| || || |||| |||||||||||||| || || ||||||||||| || Sbjct 8147 CTGCGCGGCGAGCCTTGCCTGGCGCTGGAGGAGTTTGCCCCCGCTAAGCAGGAAATTATC 8088 Query 25413 TGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCTGC 25472 |||||||| || ||||| || || |||| | || || | ||||||||||| |||||| Sbjct 8087 TGCAGCCGCTCGTTCGGGGATCGGATTACGGCCTATGAGGATATGCGCCAGGCGATCTGC 8028 Query 25473 AGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTTATC 25532 || ||||| || || | || ||||| || || |||||||| ||||| ||||| || || Sbjct 8027 AGCTATGCCGCGCGGGCAGCAGAAAAGCTGCGCGGTGAGCATCAGTACTGCCGGTTCGTC 7968 Query 25533 TCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGCGCG 25592 || || || ||||| || || |||||||| || || || ||||||||||| |||| Sbjct 7967 TCCGCCTTTGTCAAAACCAGCCCCTTCGCGCTGAATGAACCCTATTACGGCAACAGCGCC 7908 Query 25593 TCAGTGAAGCTTCTCACACCCACGCATGATTCCCGCGACATCATCAACGCTGTTGTTAAG 25652 || | ||||| || || || || || || ||||| || || ||| ||| | | Sbjct 7907 TCGCTAAAGCTGCTGACGCCGACCCAGGACTCCCGGGATATTATCGCCGCGGCGACGAGC 7848 Query 25653 TGCCTGGACAAAATCTGGCAGGATGGGCACCGCTACCAAAAGGCTGGCATTATGCTCGGG 25712 || ||||| |||||| | | ||||| ||||| || ||||| ||| | |||||||| Sbjct 7847 TGTCTGGATGCCATCTGGAAAGCGGGGCATCGCTATCAGAAGGCCGGCGTGATGCTCGGC 7788 Query 25713 GATTTCTTTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCCCCACGTGCT 25772 ||||||| |||||||| ||||| ||||| || ||||| || || ||| || || Sbjct 7787 GATTTCTACAGCCAGGGCGTCGCCCAGCTGAATCTGTTCGACGAGCTTGCTCCGCGACAC 7728 Query 25773 GGCAGCGAGAAGCTGATGGAGGTGCTGGATCAACTCAACGCCAAAGGCGGGAAGGGGACG 25832 ||||| | |||||| |||| || || || || || || ||| ||| | |||| || Sbjct 7727 AACAGCGCCAGACTGATGCAGGTTCTCGACCAGCTGAATGCGAAAAACGGCAGGGGGGCG 7668 Query 25833 CTGTACTTCGCCGGGGAGGGCATTCAGCAACAGTGGGCGATGAAGAGAGAAATGCTTTCG 25892 || || || ||||| |||| || ||||| |||||| ||||||| | || ||||| ||| Sbjct 7667 CTCTATTTTGCCGGCCAGGGGATCCAGCAGCAGTGGCAGATGAAGCGGGAGATGCTCTCG 7608 Query 25893 CCTCGGTACACTAC 25906 || || ||||| || Sbjct 7607 CCGCGCTACACCAC 7594 Score = 197 bits (218), Expect = 4e-46 Identities = 240/327 (73%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 24315 GTGTGGCTTCCCAAGTCCCGCGGCAGACTACATTGAGCAGCGTATCGATCTTAATGAGTT 24374 ||| ||||| || || || || ||||| ||||| |||| ||||| || || ||| | Sbjct 9166 GTGCGGCTTTCCCAGCCCGGCTCAGGACTATGTTGAGAAGCGAATCGACCTCAACGAGCT 9107 Query 24375 GCTCGTTTCTCATCCCAGCTCAACGTATTTTGTCAAAGCAACGGGTGATTCAATGATTGA 24434 ||| || ||||||||| | || |||||||||||||| | || || ||||| || Sbjct 9106 GCTGGTGCAGCATCCCAGCGCGACCTATTTTGTCAAAGCCGCTGGCGACAGCATGATCGA 9047 Query 24435 TGCAGGCATCAACGACGGTGATCTGCTGGTGGTGGATAGCTCACGAACTGCTGAACACGG 24494 ||| ||||| |||| || ||| ||||||||||||| ||| | || | || || || || Sbjct 9046 TGCCGGCATTGACGAAGGCGATTTGCTGGTGGTGGACAGCGCGCGTAAAGCGGAGCATGG 8987 Query 24495 CGATATTGTTATTGCAGCCGTGGATGGGGAGTTTACTGTTAAACGCCTGCAGCTGCGACC 24554 |||||| || ||||| ||||| | || |||||||| || || |||||||| | || Sbjct 8986 CGATATCGTGATTGCCGCCGTCGGCGGCGAGTTTACGGTAAAGAAGCTGCAGCTTCTGCC 8927 Query 24555 TACAGTTCAGCTCAATCCGATGAACAGCGCTTATTCGCCGATCATCGTCGGCAGCGAAGA 24614 || ||||| || ||||||||| || |||||||| ||| | |||||| |||| || Sbjct 8926 GCGGGTGCAGCTTAACCCGATGAACCCGGCCTATTCGCCCATCGTGGTCGGCCGCGAGGA 8867 Query 24615 CACGCTGGACGTATTCGGCGTCGTTAC 24641 ||||| || | ||||||||||| || Sbjct 8866 GACGCTCGATATTTTCGGCGTCGTAAC 8840 >seq25858 Length=775 Score = 219 bits (242), Expect = 1e-52 Identities = 329/461 (71%), Gaps = 11/461 (2%) Strand=Plus/Plus Query 48522 GGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGT--AAGCCGCCAAATCCTCAGCGATAC 48579 |||| | |||||| |||||| | || ||| | |||||| | |||||| ||| || Sbjct 322 GGCTCACGCCTGCGCCCGAAGTGTGGGAATGGCTCCAAGCCG--AGATCCTCGCCGACAC 379 Query 48580 CGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCTGCTTCATGTG 48639 ||||| ||| || ||| ||||| | ||||| | || || ||| || | ||||||| Sbjct 380 CGGCACCATTCACAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTG 439 Query 48640 GGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCGAGCAGGTA 48697 |||||| ||| ||||| ||| | || || ||| | ||||| |||||||| ||| Sbjct 440 GGCGTCGTCGA--GCTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTA 497 Query 48698 ATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGGTTC 48757 | | |||||||| |||||||||||||||| ||||| || |||||| ||| |||||| Sbjct 498 GCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTC 557 Query 48758 GGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAATGAC 48817 || | ||| |||||||| || ||||| ||||| |||||| | || |||| ||| Sbjct 558 GGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGAC 617 Query 48818 CTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGAT 48877 || ||||||||||| || | ||||| |||||||| ||| | || || || ||||| | Sbjct 618 CTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAG 677 Query 48878 TTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGCCAC 48937 | ||| || |||| | | |||| | ||| || | | | |||| |||||| Sbjct 678 TACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CCGAAGATCAAGCTGCAGGGCCAC 734 Query 48938 GACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGC 48978 ||||| ||||| ||| | |||||||| || || || ||||| Sbjct 735 GACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGC 775 >seq40 Length=14228 Score = 105 bits (116), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 27830 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGCGCG 27889 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 3046 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCG 3105 Query 27890 AGGAT--TGTT-ATTGCTG 27905 ||||| |||| ||||||| Sbjct 3106 AGGATGCTGTTCATTGCTG 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156996957661172