Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq11225 156 2e-33 seq360 113 2e-20 seq76 105 3e-18 seq97 84.2 9e-12 >seq11225 Length=5908 Score = 156 bits (172), Expect = 2e-33 Identities = 217/301 (72%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 5310 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 5251 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 || |||| |||| | | ||||| ||| || || | ||| ||| || || ||| Sbjct 5250 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 5191 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGC 10151 || |||| || | |||| ||||| ||||||||||| ||||||||| |||| Sbjct 5190 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 5131 Query 10152 CGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGT-CTACATCGAGGGCCGCATCC 10210 ||| |||| | ||||| ||||| || || | ||| || |||| |||| ||| ||| Sbjct 5130 CGAAATCGCGGGTGAGTATCTGCGAAAAGG-GAGCCAGTGCTACGTCGAAGGCACTCTCC 5072 Query 10211 GCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCG 10270 |||| || |||| ||| || | ||| | | |||||||| ||||||||||||| || Sbjct 5071 GCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTCG 5015 Query 10271 A 10271 | Sbjct 5014 A 5014 >seq360 Length=29890 Score = 113 bits (124), Expect = 2e-20 Identities = 224/333 (67%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||| ||||| || || |||||||| ||||| || ||||||||| |||||| | || Sbjct 27569 CGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCC 27510 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 || |||| ||| || ||||| || || || || |||| || |||||| Sbjct 27509 AAGTGGCGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCA 27450 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGC 10151 || |||||| ||||| || |||||| ||||||||||| | |||||| || || Sbjct 27449 GACCGGCGAAATGAAAGAGCAGACCGAGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGC 27390 Query 10152 CGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCG 10211 || ||| | ||||| ||||| || ||| | | ||| ||||| || |||| | || Sbjct 27389 GGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATTGAAGGCCAGCTGCG 27330 Query 10212 CACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGA---------GAT 10262 || || |||||| ||| | |||| ||||| ||||| ||||| || Sbjct 27329 TACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAA 27270 Query 10263 CGTCGCCGAGAAGATGCAGATGCTCGGCGACCG 10295 ||| | || | ||||||||||| |||| ||| Sbjct 27269 CGTGGGCGGCACCATGCAGATGCTGGGCGGCCG 27237 >seq76 Length=48202 Score = 105 bits (116), Expect = 3e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 ||||||| |||||||||||||| ||| ||| || |||||| ||| ||| |||| | Sbjct 1340 TCAACAAGGTCATCCTCGTCGGGCGTCTGGGCAATGATCCGGAAGTCCGTTACATCCCCA 1399 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGA 10093 ||| | |||| | | ||| | | | || || | || ||| ||||| || Sbjct 1400 ACGGGGGCGCAGTGGCAAACCTGCAGGTGGCCACATCAGAAAGCTGGCGTGACAAACAGA 1459 Query 10094 GCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCG 10153 || |||||| ||| ||| |||||||||||||| | |||||| ||||| | Sbjct 1460 CGGGGGAGATGCGGGAGCAGACGGAATGGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGG 1519 Query 10154 AGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCA 10213 | | | | || || |||||||||||||||| ||||||||||||||| | |||| | Sbjct 1520 AAGTGGCTGGTGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAGGGGCAACTCCGTA 1579 Query 10214 CGCGGAAGTGGCAGGATAACG 10234 | || | ||| | ||||||| Sbjct 1580 CCCGTAGCTGGGAAGATAACG 1600 >seq97 Length=44549 Score = 84.2 bits (92), Expect = 9e-12 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 9976 AACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGAGC 10035 ||||| ||||| ||||| || || || || |||||| ||| ||| |||| | | Sbjct 4722 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 4781 Query 10036 GGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGAGC 10095 || | |||| | | ||| | | |||| ||| | || || ||||| || Sbjct 4782 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 4841 Query 10096 GGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCGAG 10155 || |||||| ||| ||| |||||||| ||||| | |||||| ||||| || Sbjct 4842 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 4901 Query 10156 ATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCACG 10215 | | | ||| || |||||||||||||||| |||||||||||| || | | ||||| Sbjct 4902 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTTCGCACC 4961 Query 10216 CGGAAGTGGCAGGATAACG 10234 || | ||| | ||||||| Sbjct 4962 CGTAGCTGGGAAGATAACG 4980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197722502059566