Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq40 682 0.0 seq4 360 7e-95 seq3840 127 8e-25 seq501 111 6e-20 >seq40 Length=14228 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 5057 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5116 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 5117 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 5176 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 5177 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 5236 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 5237 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 5296 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10054 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 5297 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 5356 Query 10055 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10114 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 5357 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 5416 Query 10115 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10174 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 5417 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 5476 Query 10175 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10234 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 5477 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 5536 Query 10235 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10294 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 5537 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 5596 Query 10295 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10354 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 5597 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 5656 Query 10355 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10413 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 5657 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 5715 Query 10414 TAATTTCTGGTGTCATG 10430 |||| || ||||||||| Sbjct 5716 TAATGTCCGGTGTCATG 5732 >seq4 Length=38681 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 2994 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3053 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 2726 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 2667 Query 3054 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3113 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 2666 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 2607 Query 3114 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3172 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 2606 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 2548 Query 3173 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3232 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 2547 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 2488 Query 3233 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3292 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 2487 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 2431 Query 3293 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3352 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 2430 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 2371 Query 3353 CACCACATAGACAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3412 |||||||||| || |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 2370 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2311 Query 3413 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3472 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2310 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2251 Query 3473 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3516 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 2250 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2207 >seq3840 Length=990 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 31225 TGCGCCGTATCGTCGCCGTATTCCCGCATTAACAGAGACTGCAGCC--ACC-----TTA- 31276 ||||| ||||||||||||||||||||||||||| ||| | |||| || || Sbjct 607 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 666 Query 31277 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 31335 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 667 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 725 Query 31336 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 31394 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 726 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 781 >seq501 Length=12468 Score = 111 bits (122), Expect = 6e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 23576 TTATTATCCTGCGCC-CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCC 23634 |||| |||| |||| |||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 4764 TTATAATCCCTCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCT 4823 Query 23635 AGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 23670 |||||||||||||| ||||||| ||||||||| || Sbjct 4824 TGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAAAT 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194673924272144