Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq3869 232 8e-56 seq4092 183 3e-41 seq2516 156 5e-33 seq2053 129 7e-25 seq2100 111 2e-19 seq501 104 3e-17 seq345 91.5 2e-13 >seq3869 Length=8584 Score = 232 bits (256), Expect = 8e-56 Identities = 443/646 (69%), Gaps = 20/646 (3%) Strand=Plus/Minus Query 40707 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 40766 |||| | || | || ||||| || ||| | || |||||||| || || ||||||||| Sbjct 4773 TAAAATCTCGCTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAG 4714 Query 40767 CAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC-- 40824 | || || | ||||| | || || |||| ||| | ||||| || ||| Sbjct 4713 CTCCTGCGTGCTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCC---ACCTCCAG 4657 Query 40825 -GCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCG 40883 ||||| ||||| || | || || || || || || || |||||||||| | |||||| Sbjct 4656 CGCGATTGTGAAATACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCG 4597 Query 40884 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTG 40943 ||| |||| ||||| || || ||||| | || || ||| || ||||||| Sbjct 4596 CGCGCTGGGCAGCCCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTA 4537 Query 40944 GAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGC 41003 || || | ||||| ||||| |||||||| || |||||||| || || || || || || Sbjct 4536 CAAGCATTTCCAGACCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGC 4477 Query 41004 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAA 41063 |||||| | || || || |||||||| ||||| |||| |||| |||| |||||||| || Sbjct 4476 AACCCTCTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAA 4417 Query 41064 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTT 41123 |||||| || | ||||| |||||||| |||| || || |||||| | ||| | | Sbjct 4416 CCGTGGTACCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCT 4357 Query 41124 GATGTATAAGCGTTTAATCAATAACGATTACATCACTCTGTTCAGCCCT---GACGTTGC 41180 |||||| | ||| | | || || | || || |||||||||||| ||||| | Sbjct 4356 GATGTACACCCGTCTGCTGAAGGGCGGCGATATTACCCTGTTCAGCCCTTCCGACGTCCC 4297 Query 41181 GAACGATCGCCTGTATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGAAGAACTGTA 41240 | ||||||||||||| |||| || || |||||| |||||||| ||||| Sbjct 4296 G------GGCCTGTATGACGCCTTCT-TC--GCCGATCAGGACGAGTTTGAGCGCCTGTA 4246 Query 41241 TA-CCAGTCTTGAAAAAGACCCAACGGTACGCAAGAAACGCATCAAAGCGGTAGATCTGT 41299 | ||||| || | ||| | | || ||| | || || ||||| || || |||| Sbjct 4245 CACCCAGT-ACGAGCAGGACGACAGCATTCGTAAGCAGCGTATTAAAGCCGTTGAGCTGT 4187 Query 41300 TCCAGTTGCTTGTTCAGGAACGCGCACAGACCGGACGCAACTACAT 41345 || | || | | ||||| ||||| ||||| |||| ||| || Sbjct 4186 TCTCGCTGATGATGCAGGAGCGCGCCTCTACCGGCCGCATCTATAT 4141 Score = 122 bits (134), Expect = 1e-22 Identities = 292/436 (67%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 41873 ACTGCGACTGGGAATGGTTACGCGGTGAAATTAAAAAACACGGTTTGCGTAACTCAACGC 41932 ||| |||||||||| || |||| ||||||| ||||| |||| |||||||||| Sbjct 3595 ACTACGACTGGGAAGCATTGCGCGAGTCCATTAAAACTCACGGCCTGCGCAACTCAACGC 3536 Query 41933 TTTCTGCTTTAATGCCTTGTGAAAGTAGCTCACAGGTGAGTAACTCAACCAACGGGATTG 41992 | || || | ||||| | || | || ||| | ||| | |||||||| |||| Sbjct 3535 TCTCCGCACTGATGCCGTCCGAGACCTCGTCGCAGATCTCCAACGCCACCAACGGCATTG 3476 Query 41993 AACCTCCGCGCGGCCCTGTGAGTGTGAAATCTTCGAAAGAAGGT-TCATTCAATCAGGTA 42051 | || |||||||||| |||||| | ||| | || || || ||| || | | ||||| Sbjct 3475 AGCCGCCGCGCGGCCACGTGAGTATCAAAGCGTCCAAGGACGGTATCCTGCGC-CAGGTG 3417 Query 42052 GTACCAAACCAGAATAATCAGATTGACTTCTATGATTATCTCTGGACAATGGCAAAACGT 42111 || || | | | || | | || ||| || || ||| ||| | || Sbjct 3416 GTGCCGGATTACGAAAACCTGCAGAACGCCTACGAGCTGCTGTGGGAGATGCCGAAC--- 3360 Query 42112 GGAAACAAAGGTTATCTGTCTCATGTAGCGGTTATGCAGAAGTTTGTTGATCAGGCTATC 42171 ||| | ||||||||| | || | | |||||||||||| | || ||| | ||| Sbjct 3359 ---AACGACGGTTATCTGCAGCTGGTGGGTATCATGCAGAAGTTTATCGACCAGTCGATC 3303 Query 42172 TCTGCAAACACAAACTATGATCCGGCCAACTTCCCAGATGGTAAAGTGAA-AT-CTGAAA 42229 ||||| ||||| ||||| |||||| | |||||| || |||||| || | | | Sbjct 3302 TCTGCCAACACTAACTACGATCCGACGCGCTTCCCGTCCGGAAAAGTGCCGATGCAGCAG 3243 Query 42230 TCATCCTTGAAGATCTGCTGTATGCAAACTATTTCGGCATCAAAACGCTGTACTACCACA 42289 | | || |||| ||||| | || | | |||||| |||||||||||||||| |||| Sbjct 3242 T--TGCTCAAAGACCTGCTCAACGCCTATAAATTCGGCGTCAAAACGCTGTACTATCACA 3185 Query 42290 ACACCCGTGACGGTGC 42305 |||||||||| || || Sbjct 3184 ACACCCGTGATGGCGC 3169 Score = 104 bits (114), Expect = 3e-17 Identities = 334/500 (67%), Gaps = 40/500 (8%) Strand=Plus/Minus Query 43507 GTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTTACCTTCACGTTCAACTTTGCC 43566 || || || ||||||||||||||||||||||| || ||| | | ||| ||||||| Sbjct 2394 GTTAATGCCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCCTTCGCCTTTGCC 2335 Query 43567 GAACAAGGCAA---GATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAA 43623 |||| |||| ||||||||| ||||| || || || || ||||| ||||| |||||| Sbjct 2334 GAAC---GCAAACTGATGGAAGGCAACGCCAAAATTATCCGCCTGATCGCCCGCGATGAA 2278 Query 43624 GCACTTCATCAGAAAGGCACTCAAAGCAAGATCCGACTCTG--GCAGATGGGTAAAGATG 43681 || || || | || ||||| | |||| | || ||| || || | || | Sbjct 2277 GCGCTGCACCTGACCGGCACCC--AGCATATGCTGAACCTGCTGCGCTCCGGCAGCGACG 2220 Query 43682 ACCCAGAAATGGCGGAAATCGCTTACCAGTACGAAGAAGAAGCGACAAAGA--TTTTCCT 43739 | || ||||||||||||||||| | ||| | ||| || || | | | || | ||| | Sbjct 2219 ATCCGGAAATGGCGGAAATCGCCGAAGAGTGC-AAGCAGGAGTG-CTATGACCTGTTCGT 2162 Query 43740 GGAAGTGTACGAACAGGAAAAAGAATGGGCTGAACACCTGTT-CTCTA----TCGGTGAT 43794 | | | | ||||| ||||| ||||| || ||||||| | | | ||| |||| Sbjct 2161 GCTGGCGGCGCAGCAGGAGAAAGAGTGGGCGGACTACCTGTTCCGCGACGGCTCGATGAT 2102 Query 43795 GTAGACGGCGTATCCCTGA--AAAG-TACGATC-GCC--TATATTGAACACCTGACGGAT 43848 ||| ||||| |||| || || ||| || | || || | || || Sbjct 2101 -----CGG------CCTGAATAAAGATATTCTCTGCCAGTACGTCGAGTACATCACCAAT 2053 Query 43849 CAGCGTATGCGCGCGGTTGGCTTGCAGTCT-CCATT-TAAACCAACGCCGAACCCGTATC 43906 || |||| ||||| ||| | | ||| || || | ||| | || |||||| | Sbjct 2052 ATCCGCATGCAGGCGGTGGGCCT-CGATCTGCCGTTCCAGACCCGCTCC-AACCCGATCC 1995 Query 43907 CGTGGATGAACAAATGGTTGAAGTCTGACAACGTACAGGTAGCCCCGCAAGAGGTTGAAG 43966 | ||||| |||| ||| || || |||||||| ||||| || ||||| || || |||| Sbjct 1994 CATGGATCAACACCTGGCTGGTCTCCGACAACGTTCAGGTGGCGCCGCAGGAAGTGGAAG 1935 Query 43967 TAAGTTCTTACCTGGTTGGC 43986 | |||||||| || || ||| Sbjct 1934 TCAGTTCTTATCTCGTCGGC 1915 >seq4092 Length=20610 Score = 183 bits (202), Expect = 3e-41 Identities = 613/940 (65%), Gaps = 38/940 (4%) Strand=Plus/Minus Query 153310 CAACGAGAACGCGAACAAAGACGCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 |||||| ||||| || || ||| | || |||| || |||||||| |||||||| || Sbjct 17815 CAACGAAAACGCCAATAAGGACAGTAAAGTCATCCCGACCCAGCGCGACCTGCTGGCCGG 17756 Query 153370 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGCA 153429 |||||| || || |||| ||| || | ||| | ||||| | | | || || || Sbjct 17755 TATCGTCGCCAAGCACTACGCCCGGCAGCACCTGCTGCCCCACGATGTGGTGATGGCCCA 17696 Query 153430 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 153488 || || ||||| |||||||| || |||||| || ||| || || ||| Sbjct 17695 CGAGCGCGGCATGATCCACTATCATGACCTCGATTACTCGCCCTTCTTCCCGATGTTCAA 17636 Query 153489 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 153548 |||| ||| | ||| ||||||| |||||| | | ||||| |||||||| ||||| | Sbjct 17635 -CTGCATGCTGATCGATCTGAAAGGCATGCTGACCCAGGGCTTTAAGATGGGCAACGCGG 17577 Query 153549 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 153608 | ||||| || ||||| || ||| | || || || | | ||| ||||||| ||| | Sbjct 17576 AGATCGAGCCGCCGAAGTCTATCTCTACCGCCACCGCGGTGACGGCGCAGATCATCGCCC 17517 Query 153609 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACG--TTGATAAAGTGCTGGC 153666 || | ||| || |||||||| || ||| | | | || | ||| |||||||||| Sbjct 17516 AGGTCGCCAGCCATATTTACGGCGGCACCACCAT--CAACCGCATCGATGAAGTGCTGGC 17459 Query 153667 TCCATATGTTCAAATGACATATG--ATAAGCACTTTAAAGATGCCAAAAAGTATCAAATC 153724 || | || | || | | | ||||| ||| ||| || ||| || ||| Sbjct 17458 GCCGTTCGTC--AGCGAAAGCTTCAAAAAGCATCGCAAAATCGCCGAAGAGTGGCAGATC 17401 Query 153725 CCTCGTGATGTTCAGTATGCAATAGATAAAACTGAAAAGGATGTTTTCGACGCGTTTCAG 153784 || || | ||||| | || ||||| || | |||||| || ||| Sbjct 17400 CCGGATGCCGAAGGCTATGCCCGCGCCCGTACCGAAAAAGAGTGCTACGACGCCTTCCAG 17341 Query 153785 TCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTTACA 153844 || || || || || ||||| |||||||| || ||||| || || ||||| || || Sbjct 17340 TCGCTGGAGTATGAGGTCAACACACTGCATACCGCCAACGGCCAGACGCCGTTCGTCACC 17281 Query 153845 ATTACGTTCGGTACTGGTCAATCCCGATGTGAA---CGCATGATCCAGAAAGCGATTCTG 153901 | |||||| ||| || || | || ||| || |||||||| | |||||||| Sbjct 17280 TTCGGGTTCGGCCTTGG-CA--CCAGCTGGGAATCGCGGCTGATCCAGCAGTCGATTCTG 17224 Query 153902 AAAAACCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTGGTT 153961 ||||| ||| |||||| |||||| | | | || |||| ||||||||||||| Sbjct 17223 CGCAACCGCATTGCCGGCCTCGGTAAAAATCGCAAAACCGCGGTGTTCCCGAAACTGG-- 17166 Query 153962 ATGTTC---ATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTATGACATCAAA 154018 ||||| || | || | |||| | | | || | ||||| ||||||||| Sbjct 17165 -TGTTCGCGATCCGCGACGGCCTGAACCATAAGTTCGGCGACCCGAACTACGACATCAAA 17107 Query 154019 CAACTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTAGTTCAGCTAAC 154078 || || || ||||| || || || ||||||||||| |||||| ||| ||| Sbjct 17106 CAGCTGGCGCTGGAGTGCGCCAGCAAGCGCATGTACCCGGATATC-----CTCAACTACG 17052 Query 154079 AAC-CGTGCT----ATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTT 154133 | | ||| | | || || | |||| | | | || ||||| || ||||| | Sbjct 17051 ATCAGGTGGTGAAAGTCACCGGGT----CGTT--TAAAACGCCGATGGGCTGCCGCAGCT 16998 Query 154134 TCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAACCTGG 154193 |||| | || ||| | | || ||||| | | | | ||||||||| |||||||| | Sbjct 16997 TCCTCGGGGTATGGGAAAACGAGAACGGCGAGCAGGTGCATGATGGACGCAATAACCTCG 16938 Query 154194 GTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGC 154233 | ||| | | ||||||| ||||| || || || ||||| Sbjct 16937 GCGTGATCAGTCTCAACCTGCCGCGCATCGCCCTGGAAGC 16898 >seq2516 Length=21774 Score = 156 bits (172), Expect = 5e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51000 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51059 || ||||| || || ||| | ||||| |||||| |||| |||||||| ||| || || Sbjct 1776 GTCGAAGGCGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACCCTGCTGGACGCG 1835 Query 51060 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGT 51119 || ||||||| |||||||| || ||| | || || ||||| |||||||| || || || Sbjct 1836 GTTGAGCATCCGGAAAAATATCCGCAGCTGACCATTCGTGTTTCCGGCTACGCGGTACGC 1895 Query 51120 TTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51179 ||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || || Sbjct 1896 TTCAACTCTCTGACGCCGGAACAGCAGCGCGACGTAATCGCCCGTACCTTTACCGAAAGC 1955 Query 51180 CTATAA 51185 || ||| Sbjct 1956 CTGTAA 1961 >seq2053 Length=29219 Score = 129 bits (142), Expect = 7e-25 Identities = 133/179 (74%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 100945 GAGCGAAGCGAAC-ACACGAACGAAGTGAGTGT-TATGTACGATGTACTGTTTATANNNN 101002 ||||| ||||| ||||||||| ||||||||| | ||||| |||||||||||||| Sbjct 12456 GAGCGCAGCGAGGGACACGAACGTAGTGAGTGTCTGTGTACTATGTACTGTTTATAATAT 12515 Query 101003 NNNNNNNNNNNNNNNNNNNNNNNCAGTACATTTCCGTATACTTTTTATACAATCGTTAAC 101062 |||||||||||||||| |||||| ||| || |||| Sbjct 12516 TTATATTTTATATATAGAAAAAACAGTACATTTCCGTATGTTTTTTAATCAA-CGCTAAC 12574 Query 101063 TATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTCGCTCGCGATCTAATTTTTTAGTTG 101121 |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 12575 TATCCGTCTTCGCTTCGCTTGACGGAACTCGCTTCGCTCGCGGTCTTGTTTTTGGGTTG 12633 >seq2100 Length=19628 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39606 CAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGAT 39665 || ||||||| | || ||| ||| |||||||||| || ||||||||| | || Sbjct 19420 CAGCTGAAAAACGACCCGGACTCCCGCCGGATCATCGTCTCGGCATGGAACGTCGGCGAG 19479 Query 39666 CTGGATGATATGGCTCTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGT 39725 |||||| | ||||| ||| ||||| ||| |||||||||||| ||| | |||| Sbjct 19480 CTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTACGTCGCCGACGGC 19539 Query 39726 AAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAAT 39785 || || || ||| |||||||||||| ||||| ||| | || ||||||||||| Sbjct 19540 AAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCCTCGGCCTGCCGTTCAAT 19599 Query 39786 ATCGCCTCCTACGCTCTCCTGACGCATAT 39814 |||||| ||| || || ||| |||||| Sbjct 19600 ATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq501 Length=12468 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 49479 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAA 49538 |||||| |||||| | | ||||||||| || ||||||||||||| ||| |||||||||| Sbjct 4780 CGGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAA 4838 Query 49539 GTCCAGCAGGGGCCACCAAATA 49560 |||||||||||||||||||||| Sbjct 4839 GTCCAGCAGGGGCCACCAAATA 4860 >seq345 Length=175672 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 39629 TCGCGGGATC--ATCGTTTCCGCATGGAACCCTGTTGATC-TGGATGATATGGCTCTGCG 39685 |||||| || ||||||||||||||||| || | | || | ||||| ||||| |||| Sbjct 150720 TCGCGGCGTCTGATCGTTTCCGCATGGAATCC-GGCGCTCGTCGATGAAATGGCGCTGCC 150778 Query 39686 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 39745 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 150779 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 150838 Query 39746 TCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 39805 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 150839 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 150898 Query 39806 GAC 39808 ||| Sbjct 150899 GAC 150901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569888451010760