Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq12 107 4e-18 seq25 105 2e-17 seq4520 93.3 1e-13 seq273 86.0 1e-11 >seq12 Length=339259 Score = 107 bits (118), Expect = 4e-18 Identities = 288/436 (66%), Gaps = 16/436 (4%) Strand=Plus/Plus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 || ||||| || ||||| | ||||||||| ||| | ||| |||| ||||| || || Sbjct 143480 ATCCAGATCCTGTCTCGCAGAACCAAAAACAATCCTATTTTAATTGGGGAACCCGGAGTA 143539 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AG 150476 ||||||||| || | || ||| | || | ||| ||| || ||||| || || Sbjct 143540 GGTAAAACAGCTATTGCCGAGGGAATTGCTTTCAGGATCATTAAAGGCGATGTACCGGAG 143599 Query 150477 ATTCTATGAAAGATGTTGAAATTCTTTCTT---TGAATATGGGTGCATTTACTGCTGGTA 150533 | ||| | |||| | ||| | ||| || || | |||||||| | | ||| ||| Sbjct 143600 AATCT-TAAAAG----TAAAACTGTTTATTCCCTGGACATGGGTGCTCTCATTGCGGGTG 143654 Query 150534 CTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAAC 150593 | || || |||||||| || ||| | || | | | ||||| | | || Sbjct 143655 CGAAATACAAAGGTGAATTTGAGGAAAGATTAAAAGCCGTCGTTAAAGAAGTCAGCCAAA 143714 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 |||||| || ||||| |||| || ||||| || ||||| || | |||||||||| Sbjct 143715 GCGATGGAGATATTATTTTGTTTATTGATGAGATTCATACCCTTGTTGGTGCTGGTGGC- 143773 Query 150651 CTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAA 150710 || | ||| | ||||| ||||| ||||||||||| || | | || ||| Sbjct 143774 --GGTGAAGGTGCAATGGATGCCGCAAATATTTTAAAACCTGCACTGGCCAGAGGAGAAC 143831 Query 150711 TTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAG 150770 | | | || || || ||||| |||||||||| ||| | ||||||||||| || Sbjct 143832 TGAGGGCTATTGGGGCGACAACACTGGATGAATATCAGAAATATCTTGAAAAAGATAAAG 143891 Query 150771 CACTACAGCGTCGTTT 150786 | || |||||||||| Sbjct 143892 CCCTGGAGCGTCGTTT 143907 >seq25 Length=2002 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||| ||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||| Sbjct 41 ATACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTC 100 Query 324571 GAACCCGTTTAGCTCCAC 324588 || ||||||| ||||||| Sbjct 101 GATCCCGTTTGGCTCCAC 118 >seq4520 Length=363 Score = 93.3 bits (102), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 324513 ATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGA 324572 ||||||||||||||||| |||||||||| |||| ||||||| || ||||| |||||||| Sbjct 208 ATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGA 149 Query 324573 ACCCGTTTAGCTCCAC 324588 |||| ||||||||| Sbjct 148 TCCCGCATAGCTCCAC 133 >seq273 Length=14092 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 324504 AAGAAGTA-TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTC 324562 ||||||| | |||||||||||||||| |||||||||| ||| | ||| | | ||||| Sbjct 11092 AAGAAGTCCTGTGGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTC 11033 Query 324563 AACGGTTCGAACCCGTTTAGCTCCACAAA 324591 | |||||||| |||| |||||||||| || Sbjct 11032 AGCGGTTCGATCCCGCTTAGCTCCACCAA 11004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147175364249046