Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq40 682 0.0 seq3840 636 6e-178 seq4 363 6e-96 seq1687 217 6e-52 seq501 111 6e-20 >seq40 Length=14228 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 5057 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5116 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 5117 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 5176 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 5177 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 5236 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 5237 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 5296 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 5297 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 5356 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 5357 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 5416 Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 5417 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 5476 Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 5477 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 5536 Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 5537 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 5596 Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 5597 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 5656 Query 10856 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10914 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 5657 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 5715 Query 10915 TAATTTCTGGTGTCATG 10931 |||| || ||||||||| Sbjct 5716 TAATGTCCGGTGTCATG 5732 >seq3840 Length=990 Score = 636 bits (704), Expect = 6e-178 Identities = 418/460 (91%), Gaps = 5/460 (1%) Strand=Plus/Plus Query 30244 CCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTA 30303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 CCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTGGAAGGAACCCAGAAGTATATTA 79 Query 30304 ATGAGCAGTGCAGATAGAGTTGCCCATATCGATGGGCAACTCATGCAATTATTGTGAGCA 30363 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| Sbjct 80 ATGAGCAGTGCAGATAGAGCTGCCCATGTCGATGGGCAACTCATGCAATTATTATGAGCA 139 Query 30364 ATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATT 30423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 ATACACCCGCGCTTCCAGCGGAGTATAAATGCCTAAAGTAATAAAACCGAGCAATCCATT 199 Query 30424 TACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGC 30483 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 200 TACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGC 259 Query 30484 TGCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTC 30543 |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| Sbjct 260 TGCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTC 319 Query 30544 CTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGT 30603 |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 320 CTTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGT 379 Query 30604 AATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC- 30662 |||||||| ||||| || | || | | |||||||||||| | |||| | ||| Sbjct 380 AATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCA 435 Query 30663 TTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 30702 || || || |||||||| |||||| | |||||||| Sbjct 436 TTGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 475 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 30758 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 30817 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 604 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 662 Query 30818 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 30876 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 663 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 721 Query 30877 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 30936 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 722 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 778 Query 30937 CGG 30939 ||| Sbjct 779 CGG 781 >seq4 Length=38681 Score = 363 bits (402), Expect = 6e-96 Identities = 397/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 2962 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3021 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 2726 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 2667 Query 3022 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3081 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 2666 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 2607 Query 3082 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3140 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 2606 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 2548 Query 3141 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3200 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 2547 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 2488 Query 3201 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3260 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 2487 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 2431 Query 3261 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3320 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 2430 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 2371 Query 3321 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3380 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 2370 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2311 Query 3381 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3440 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2310 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2251 Query 3441 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3484 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 2250 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2207 >seq1687 Length=800 Score = 217 bits (240), Expect = 6e-52 Identities = 212/269 (79%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 29919 GGGCTG--AATCATTACCGCGATAACGCCATCACCTACAAAGCGCAGCGCGATAAAAAAG 29976 |||||| ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 533 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 592 Query 29977 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 30036 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 593 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 652 Query 30037 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 30096 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 653 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 712 Query 30097 CTCTTCGCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAG 30156 |||| || | || |||||||||||| || | ||| ||||| || |||| ||| Sbjct 713 CTCTGCGTGATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGT-CAG 771 Query 30157 GTCCCGTGCGTGAAGCCACCGGCACCGCC 30185 | |||||||||||||| ||||||| Sbjct 772 --TCAGTGCGTGAAGCCAC---CACCGCC 795 >seq501 Length=12468 Score = 111 bits (122), Expect = 6e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 24079 TTATTATCCTGCGCC-CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCC 24137 |||| |||| |||| |||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 4764 TTATAATCCCTCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCT 4823 Query 24138 AGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 24173 |||||||||||||| ||||||| ||||||||| || Sbjct 4824 TGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAAAT 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193487122216390