Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019452.1 Length=156628 Score E Sequences producing significant alignments: (Bits) Value seq4256 89.7 5e-13 seq2048 87.8 2e-12 seq3869 86.0 6e-12 >seq4256 Length=25676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 136698 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 136757 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 10069 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 10010 Query 136758 CATCGTCGCCAAATTGAAGTAG 136779 || | |||||||| ||| || Sbjct 10009 CAGAGGAGCCAAATTTAAGAAG 9988 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 136698 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 136757 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 11837 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 11896 Query 136758 CATCGTCGCCAAATTGAAGTAG 136779 || | |||||||| ||| || Sbjct 11897 CAGAGGAGCCAAATTTAAGAAG 11918 >seq2048 Length=13079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 136698 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 136757 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 4083 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4024 Query 136758 CATCGTCGCCAAATTGAA 136775 || | |||||||| || Sbjct 4023 CAGAGGAGCCAAATTTAA 4006 >seq3869 Length=8584 Score = 86.0 bits (94), Expect = 6e-12 Identities = 267/407 (66%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 52936 GTTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTT 52995 ||| ||||| | ||| ||||| || | || | ||||| | || ||||||||||| Sbjct 4362 GTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTT 4421 Query 52996 TTTGAGAACAACGACATCATCAAATTGATAATGCCAGAT-GGGAACATAGCATGTTGCCG 53054 ||| || || | | || | || |||||| || ||| | | || ||||||| Sbjct 4422 TTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGA-AGAGGGTTGCCG 4480 Query 53055 ATCCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC---AAATACTTGA 53111 || || || | ||||| || ||||| || |||| || ||| |||| |||| Sbjct 4481 CGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCG---GTCTGGAAATGCTTGT 4537 Query 53112 TGAATGGAAC-CAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCA 53170 ||| |||| ||| || || |||| ||| || ||||| ||||| || | | Sbjct 4538 AGAACGGAATGCAG-CCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCG 4596 Query 53171 CGAATTGCCCCAACATCGAATCCAATGCCAGCACGTTTGGAAACATAATCCACGATGCTT 53230 ||||| ||| | | || || ||||| || || | |||||| || | ||| || Sbjct 4597 CGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCG 4656 Query 53231 TTCGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATCAATACACAAGAGCTG 53290 | | ||||| || || || |||| | || || | ||||| || || |||||| Sbjct 4657 CTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTG 4716 Query 53291 AACTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAG 53337 ||||| ||||| ||||| || ||||||||||| || || || || || Sbjct 4717 AACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAG 4763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500904799620960