Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq7329 132 1e-26 seq1800 129 1e-25 seq305 87.8 4e-13 >seq7329 Length=1002 Score = 132 bits (146), Expect = 1e-26 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 11872 CCCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGC 11931 |||||| || || | || ||||| || ||||||| |||||| |||| ||| || Sbjct 293 CCCAAAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGC 234 Query 11932 TGCCATCATGTCATCGCGGCTCACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAAC 11991 || | || || || ||||| | ||| ||||| || || ||||| || ||||| Sbjct 233 CGCGAGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAAC 174 Query 11992 CTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAG 12051 ||| | || |||| || || ||||| || || || |||| ||||| |||||| Sbjct 173 CTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAG 114 Query 12052 GTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGTC 12111 |||||| |||||||| |||||||| | | | |||| ||| ||| | || | ||| Sbjct 113 GTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTC 54 Query 12112 CTCCTGGTTCTGCGCGGCGTCAGTCATGTACATGATGAAGCCTGCGTGGCT 12162 ||| | |||||||| ||||| |||||||||| ||||| || || ||||| Sbjct 53 CTCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCT 3 >seq1800 Length=1271 Score = 129 bits (142), Expect = 1e-25 Identities = 287/428 (67%), Gaps = 2/428 (0%) Strand=Plus/Plus Query 25443 CCGGCAAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCATATTG-CTGTATT 25501 || |||||| |||| ||||||||||| || |||||||| || || | | || |||| || Sbjct 35 CCAGCAAACAGTACCGATATTGCACCACCAGATATTCCGGC-AGGCTTCGTGGCTGTTTT 93 Query 25502 TGACGCTGAAACCGAAATGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGA 25561 || ||| | | |||| ||| ||| ||||| || || | |||||||| || Sbjct 94 CAACAGTGATGAGGCATCGTGGCATCTCGTTGAAGACCATCGGGGTAAAACGGTTTATGA 153 Query 25562 CACAACAACCGGCAATCAGGTTTATATCTCCTCTCCCGGTCCGCTACCTGAAAACGTCAC 25621 | | ||||| | | | | ||| || | ||||||| |||| ||||| || || Sbjct 154 CGTGGCTTCCGGCGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTAC 213 Query 25622 ATCAGTTTCACCTGATGGTGAATATCAGAAATGGAATGGTAAGGCGTGGGTAAAAGACGA 25681 | | || || | || ||||||||||| ||||| || | || ||||| || || Sbjct 214 CTGGTTGTCGCCGGGAGGGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATAC 273 Query 25682 AGTGGCTGAAACAGCGGCCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCA 25741 | || |||| | | | | | || || || |||| ||| |||| | | || |||| Sbjct 274 GGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCAGAAGAAACAAAAAACAGCCTGATGCA 333 Query 25742 AACAGCAGCGGAGAAAATCGCGCCATTACAGGATGCTGTTGATCTTGAAATCGCAACAGA 25801 ||| ||| | || |||||| | ||||||||||| ||||| ||||||||||| || Sbjct 334 GGTAGCCAGTGAGCATATTGCGCCACTTCAGGATGCTGTAGATCTGGAAATCGCAACGGA 393 Query 25802 TGATGAGAAAGTGCAGCTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTAGA 25861 || || | | ||| || | ||||| || || |||||||| | ||||| || | Sbjct 394 GGAAGAAATCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTAA 453 Query 25862 TACCACAA 25869 ||| |||| Sbjct 454 TACAACAA 461 >seq305 Length=11581 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 37 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 84 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11228 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11275 Score = 87.8 bits (96), Expect = 4e-13 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 34070 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 34117 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11228 ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT 11275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109016245978546