Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq1687 208 2e-49 seq360 158 3e-34 seq40 127 5e-25 seq7234 96.9 9e-16 seq76 95.1 3e-15 seq97 91.5 4e-14 >seq1687 Length=800 Score = 208 bits (230), Expect = 2e-49 Identities = 209/271 (77%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 17242 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 17301 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 17302 TGGGCTGTTAATCATTACCGTGATAACGCCATGACCTACAAAGAACAGCGCGACAAA--- 17358 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 591 Query 17359 GCCACA----TCCATC--------------ATCGCTGACATGCAGAAGCATCAACGTGAT 17400 |||| | | | | || |||||||||||| || || |||||| Sbjct 592 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 651 Query 17401 GTAGCAGAACTCGACGCAAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 17459 || || | ||| || | || |||||| |||||| | ||| |||| || || || || || Sbjct 652 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 710 Query 17460 AAGCCTCCGTGCTGATGTTTCTGCTGGTCGT 17490 || |||| || |||| | ||||||||| Sbjct 711 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq360 Length=29890 Score = 158 bits (174), Expect = 3e-34 Identities = 242/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 4173 GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATC 4232 ||| || ||||| |||||||| || || ||| ||| | |||||||| ||| | | || Sbjct 27239 GCCGCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACTTCGGTGGTGTATTTGTC 27298 Query 4233 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGA 4292 ||| ||| |||||| ||| || | || |||| | ||||||| || |||| ||| Sbjct 27299 CTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGAGA 27358 Query 4293 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 4352 |||||| |||||||| || | || | ||| |||||||| ||| || || |||||||| Sbjct 27359 GCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGGTG 27418 Query 4353 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 4412 |||||| |||||||| || || || || ||||| |||||||| ||| || || || Sbjct 27419 CCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGCCAGGATTCGGAAGTTGC 27478 Query 4413 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 4472 | || | ||| || | || || ||| || | | ||| || || ||||| Sbjct 27479 CAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCGTACTTCCGGGTCCTGCCC 27538 Query 4473 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 || ||| | | |||||||| |||||||||||||| ||||| Sbjct 27539 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 27583 >seq40 Length=14228 Score = 127 bits (140), Expect = 5e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 37504 ATTATGCCACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTTAT 37563 |||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1184 ATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTAT 1243 Query 37564 CGAGATACTGAGCATGGTTGTAAAT 37588 ||||||||||||| ||||||||||| Sbjct 1244 CGAGATACTGAGCGTGGTTGTAAAT 1268 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 39485 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCATTTCTTCAATTCGAATATTGGTTAC 39544 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2861 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 2920 Query 39545 GTCT 39548 |||| Sbjct 2921 GTCT 2924 Score = 109 bits (120), Expect = 1e-19 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 204 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 263 |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 3043 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 3102 Query 264 GCGAGGAT 271 |||||||| Sbjct 3103 GCGAGGAT 3110 >seq7234 Length=2716 Score = 96.9 bits (106), Expect = 9e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 18760 TTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCAAGT 18819 ||||| || ||||| ||| || || |||||||||||||| ||||| || || || ||| Sbjct 406 TTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCCAGT 465 Query 18820 CCGGAAAATTTTGATGCAGAAATTGGTCGGAAGATTGCCAGACAGAATGCTGTAAACAAA 18879 ||||| || || || || ||| | || || ||||||||| | ||||| || | | | || Sbjct 466 CCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAGAAG 525 Query 18880 ATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 18912 |||||| ||| || ||| ||| |||||| Sbjct 526 ATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 558 >seq76 Length=48202 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 4282 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 4341 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 1559 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 1500 Query 4342 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 4401 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 1499 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 1440 Query 4402 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 4460 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 1439 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 1381 Query 4461 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 4499 ||||||| || || || || | | ||| ||||| || Sbjct 1380 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 1342 >seq97 Length=44549 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 4273 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 4332 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 4948 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4889 Query 4333 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 4392 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 4888 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4829 Query 4393 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 4451 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 4828 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 4770 Query 4452 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 4505 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 4769 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 4716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126703115429392