Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq9346 109 3e-19 seq4821 87.8 9e-13 seq373 87.8 9e-13 >seq9346 Length=3494 Score = 109 bits (120), Expect = 3e-19 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 17072 CTGCCTCGCAGTGGCCTTGGGCATAAATCTGGCATTGTACTTGGGAACCTGGTGGGTCTG 17131 ||||| ||| ||||| || || ||| ||||| || || || ||||||||||| ||| Sbjct 1851 CTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTCCTCGGCAACCTGGTGGGGCTG 1792 Query 17132 ATTGATTCGGACTATCAGGGTGAGCTGAAGGTTTCCCTGTGGAACCGCAGCGCTGAAC-C 17190 || || |||||||| ||||| ||| ||| ||| ||| |||||||| || | || | | Sbjct 1791 ATCGACTCGGACTACCAGGGCGAGTTGATGGTGTCCTGCTGGAACCGTGGC-CAGACCGC 1733 Query 17191 ATACACTGTCAGCCCT-GGTGAGCGTGTTGCCCAAATGGTTATCGTGCCAGTAGTGCAGG 17249 | || | || ||| | || ||||| |||||||| | || | || || || ||||||| Sbjct 1732 GTTCAATATC-GCCGTCGGCGAGCGCATTGCCCAACTCGTGCTGGTACCGGTGGTGCAGG 1674 Query 17250 CACAGTTTGAGCTGGTTGATGAATTC 17275 | || || |||||||| || || ||| Sbjct 1673 CGCACTTCGAGCTGGTCGAAGAGTTC 1648 >seq4821 Length=4025 Score = 87.8 bits (96), Expect = 9e-13 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 17060 GCTGCTGTGCTGCTGCCTCGCAGTGGCCTTGGGCATAAATCTGGCATTGTACTTGGGAAC 17119 || || ||| | ||||| ||| ||||| || ||||| |||| | || || || ||| Sbjct 2561 GCGGCGGTGATCCTGCCGCGCTCCGGCCTGGGTCATAAGCATGGCGTAGTCCTGGGCAAC 2502 Query 17120 CTGGTGGGTCTGATTGATTCGGACTATCAGGGTGAGCTGAAGGTTTCCCTGTGGAACCGC 17179 |||||||| || || || || || || ||||| |||||| ||| ||| | ||||||||| Sbjct 2501 CTGGTGGGCCTTATCGACTCCGATTACCAGGGGCAGCTGATGGTGTCCGTCTGGAACCGC 2442 Query 17180 AG--CGCTGAACCATACACTGTCAGCCCTGGTGAGCGTGTTGCCCAAATGGTTATCGTGC 17237 | || || | | | | || || || || ||| | || || ||||| | |||| Sbjct 2441 GGTCAGCAGAGC--TTTATTATCGAGCCGGGCGAACGTATCGCACAGATGGTCTTTGTGC 2384 Query 17238 CAGTAGTGCAGGCACAGTTTGAGCTGGTTGATGAATTCACTGCTTCAGAACGTGGAGACG 17297 | || || ||||| | ||| | ||||| || ||| ||| | || || || || | Sbjct 2383 CGGTCGTTCAGGCGGAATTTAACCTGGTGGAATCCTTCGATGCCACCGACCGCGGCGAAG 2324 Query 17298 GCGGATTTGGCCAC 17311 |||| || || ||| Sbjct 2323 GCGGCTTCGGTCAC 2310 >seq373 Length=63667 Score = 87.8 bits (96), Expect = 9e-13 Identities = 238/360 (66%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 60490 CAGGTCAGGATACAGAGTTCCTTTCAGGTTGAAAGCATTAAGCCATCGCTGCAGGAATTT 60549 ||| || |||||||| | || || || | ||| | ||||| ||||| | || || Sbjct 8866 CAGATCGGGATACAGCTTCCCGCGCATATTCAGGGCAGTGAGCCAGCGCTGGAAAAACTT 8807 Query 60550 AACTCCTACCGATGGCCCCATGTTCACCCCGATGTCCATGAGCT----TGGCAGCAATAT 60605 | | | ||||||||||||||||||||||| |||| |||| || ||| || Sbjct 8806 ACTTGCAACCGATGGCCCCATGTTCACCCCAGTGTCGCAAAGCTCATCTGCCAGTAA--- 8750 Query 60606 TAGCAGATACGGCAGACACTTGGTCTAGCCGAGGGCCGAACCAATAATCAGCCTCGAAGA 60665 | ||||| | ||| ||||| | ||| || |||| ||| |||||| | | || Sbjct 8749 -CGTAGATAAACTTGCCACCTGGTCAAACCGGGGTCCGATCCAGTAATCACTCAGCAGGA 8691 Query 60666 TTTCTACAGCCTGTTCCCGGGAGAGGTTACGCATGTCGCCGGTATAACCGTGGGCACGAG 60725 ||| || ||||| | || | ||||| || ||||| || || || || |||| Sbjct 8690 TTTGCTTTGCTGTTTCCCTAGGCAGCTCTCGCATATCACCGGTGTAGCCATGCGCGCGAG 8631 Query 60726 CTACCTTCTGGGTAATGCCCCACTTAGTGGGGCCACCTCTGTCATCCGGGTTATTGACGT 60785 || |||| || |||||||| || || || ||| | ||| |||| || ||| | Sbjct 8630 CTGTGGTCTGTGTGATGCCCCAGCGGGTTGGCCCGCCTTTATCAGAAGGGTGATCGACAT 8571 Query 60786 AGCCGCCTTCTTTGCCAATTACTTGGTCAATGATTTGCGTCT-TGTTCATCGT-CTTTCA 60843 | || |||||||| || | | ||||| ||||| |||| ||||| || |||||| Sbjct 8570 ACCCACCTTCTTTTCCGAGGATGCCTTCAATAATTTG-GTCTACTTTCATTGTGCTTTCA 8512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238733843340610