Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq34 210 3e-49 seq48 93.3 6e-14 >seq34 Length=203541 Score = 210 bits (232), Expect = 3e-49 Identities = 608/923 (66%), Gaps = 32/923 (3%) Strand=Plus/Minus Query 178630 GCTGTAAACTGGAACAATCCAGATAACGATTA---TGCCCAAATGTTCTGGGATCAAAAT 178686 || ||||||||||| | || || || ||||| ||||| |||||||||| || || Sbjct 17557 GCCGTAAACTGGAATACCCCCGAAAATGATTACAGTGCCC---TGTTCTGGGAACAGAAC 17501 Query 178687 ATTAAACAATTCTGGATCGATACAGAATATGTACCTTCTAACGATATA-ACTTCTTGGAA 178745 | | ||||||||| | ||||| |||||| ||||||| || || || || || | || Sbjct 17500 CTGAGGCAATTCTGGGTGGATACTGAATATATACCTTCCAAAGACATTGACAGCTGGAAA 17441 Query 178746 GTCGTTAGAACCTGAAATGAAGAAAACATACATGAGAGCTTTAGGAGGTCTTACATTACT 178805 | || || ||||| || | | || | || || | |||||| | || | || Sbjct 17440 GGACTTTCT-CCGGAAATCCAGCAGGCTTATAAAAGGGCCCTGGGAGGTTTGACCCTGCT 17382 Query 178806 TGACACTTTACAAAGTCATACAGGTATGCCTAAGATCATAGATCATATCGACTCTCTACA 178865 ||||| | ||||| || || || ||||| || || | || ||||| || || || || Sbjct 17381 GGACACCCTGCAAAGCCACACCGGAATGCCCAAAATTCTGGACCATATTGATTCGCTGCA 17322 Query 178866 AAACAAAGCTGTATTATCGTATATGTGTATGATGGAAGCGATACATGCTAAATCATACTC 178925 ||| ||||| || | || | |||||||||||||||||| || ||||| ||||| || || Sbjct 17321 AAATAAAGCCGTGCTTTCTTTTATGTGTATGATGGAAGCCATTCATGCAAAATCCTATTC 17262 Query 178926 AACGATATTTACAACAGTAGCTAATAAAGATGAAATCGATGAAATCTTTAGTTGGATAAC 178985 ||||| |||||||| || | | || | | |||||| ||||| | ||| ||| || Sbjct 17261 CACGATTTTTACAACCGTGACCACTACACAAGAAATCAATGAACTTTTTGACTGGGTACA 17202 Query 178986 TACAAACCCTCAGATTCAATATAAAGCTAGTGTTATCGATTCTTACTATCAAAAGTTAGC 179045 | | ||| | | || | |||||| || || || || | | | Sbjct 17201 TGCCAACAAATACCTGCAGTTTAAAGCAGCAACAATTGACCGCTATTACCGCGCCCTGGA 17142 Query 179046 AAATCCTGAAGTCGATCCAAAGGATTTATTCATGGGGTTAGCTGCATCAGTAATGTTAGA 179105 || | || || | || || ||| ||| || | || || || || | || Sbjct 17141 CAAAAAACAGGTGAATGATGAAGAATTGTTCCTGGCTTTGGGCGCTTCGGTTCTGCTGGA 17082 Query 179106 ATCATTTCTATTTTATTCTGGATTCTTTTTACCATTATATCTTTCTGGTAACGGTAAGAT 179165 ||| ||||| ||||| ||||||||| | || | | |||| || | ||| | || Sbjct 17081 ATCTTTTCTGTTTTACAGCGGATTCTTTATGCCCCTTTGGCTTTGCGGACAAGGTGAAAT 17022 Query 179166 GAAAGCTTCAGCTGATATCATTAAGAAAATCGTAGCTGATGAATCTATTCATGGTGTATT 179225 | || || ||||||||||| || ||| | || ||||||||||| ||||||||||| Sbjct 17021 GGTCGCCAGTGCCGATATCATTAAAAAGATCATTGCCGATGAATCTATACATGGTGTATT 16962 Query 179226 CGTTGGATTACTTGCACAAGAAGTTTACAACACTTTCGATGATACTACAAAGAAAGAATT 179285 ||||| | | || || || ||||| || || || || | ||||| | Sbjct 16961 TGTTGGCCTGTTGGCCCAGGATGTTTATAAAACACTCCCCCAT-CCGCAAAGGGCG---- 16907 Query 179286 AAAAGATGAACTGTTAAGAACTATTTACAG----TTTATACGAAAACGAAGCT-AAGTAT 179340 |||||| ||||| | | | ||| ||||| ||||| | |||| || || Sbjct 16906 -AAAGATAAACTG--ACCGCCCTGCTGCAGGAACTTTAT--GAAAATG-AGCTAAAATAC 16853 Query 179341 ACTGATTACATTTATACCGAAGTTGGATTATCTTCAGATGTAAAAGAATACGTTAAATAC 179400 ||||| | | |||||||| |||| | | | || ||||||||||| || ||| Sbjct 16852 ACTGAAGAGGTCTATACCGACATTGGCCTTACCGCTGAGGTAAAAGAATATGTACGTTAC 16793 Query 179401 AATGCTAATAAAGCTTTGATGAATCTTGGATTCGATCCAGAATTCACACATGGTGAAA-- 179458 ||||| || ||||| ||||||| |||||||| || ||| | | ||| ||| Sbjct 16792 AATGCCAACAAAGCCCTGATGAACCTTGGATTTGA---GGAACTTTTTGA-GGTAAAAGA 16737 Query 179459 --TAAATCCAATCGTATTGAATGGACTTAACACCGAAACAACTCAACATGATTTCTTTTC 179516 | || || || ||||| || ||| | ||| ||||| || ||||||||||||||||| Sbjct 16736 GGTGAACCCGATTGTATTAAACGGATTAAACCTGGAAACCACACAACATGATTTCTTTTC 16677 Query 179517 TATGAAATCTACTAATTACGAAA 179539 | ||||| || ||||| |||| Sbjct 16676 AAAAAAATCGACCAATTATGAAA 16654 Score = 188 bits (208), Expect = 1e-42 Identities = 478/723 (66%), Gaps = 8/723 (1%) Strand=Plus/Minus Query 173007 GCTGAAATCATGATTAATCAGGAATATCAACCTGCTACCCCGACATTCTCAAACGCTGGA 173066 || || ||| | |||||||||||||| || || || ||||| || || || || || Sbjct 19267 GCGGAGATCCTCATTAATCAGGAATACCAGCCGGCCACCCCTACTTTTCTGAATGCCGGT 19208 Query 173067 AAACTTAAAGGT---GGTGAATTGGTATCATGTTTCTTAGATGAAATCGGTGATTCTAAA 173123 ||| ||| || ||| ||||||| || ||||| | ||||||||||| || | Sbjct 19207 AAA---AAACGTTCTGGTCAATTGGTTTCCTGTTTTCTGGATGAAATCGGAGACAACATC 19151 Query 173124 GTTGGAATATCCAAATCTATTCAAGCCGCATTGGATTTATCTTCGATGGGTGGAGGTGTA 173183 ||| || | | ||| | | || || | | ||||| || ||||| || ||| Sbjct 19150 AATGGGATTGGTTATGCCATTGACTCGGCCATGAAACTCTCTTCTATAGGTGGCGGGGTA 19091 Query 173184 TCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCTATTAAAGGAATCGACGGAAGA 173243 || |||||| | || ||| |||| || || || ||||| |||||||| | || || | Sbjct 19090 TCTTTTAACCTTTCCAAAATACGGGCGCGCGGGGAAGCCATTAAAGGTGTGGAGGGCCGG 19031 Query 173244 GCTTCAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAA 173303 | || || | || || |||||||| || |||||| |||| || ||||| ||||| Sbjct 19030 TCCAGTGGCGTGCTTCCGGTCATGAAAATTCTGGAAGATACTTTCTCCTATGCCAATCAG 18971 Query 173304 TTAGGACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAA 173363 | || || || ||||| || || || | || | ||| | || ||| | || ||||| Sbjct 18970 CTTGGTCAGCGGCCAGGGGCGGGCGCGGTATACCTGAATGTTTTTCATACCGACATTGAA 18911 Query 173364 GAATTTCTAGATTCTAAGAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCG 173423 |||||||| |||| ||| || |||||| |||||||| | | | ||||| ||||| Sbjct 18910 GAATTTCTGGATTGTAAAAAGATCAACATCGACGAAAAGGTAAGGATCAAATCTCTTTCT 18851 Query 173424 TTAGGTGTTATCGTTCCTGACAAATTCATGGAATTAGCTG-AGAAGGATGAACCATTTTA 173482 | ||||| | | || || || || ||||| | |||| || | ||||| | ||| Sbjct 18850 ATTGGTGTGGTGATCCCGGATAAGTTTATGGACATTGCTGCAGCA-GATGAGATCTGTTA 18792 Query 173483 TGTTTTCTATCCATATACAGTTAAGAAAGAATACGGTAAACATCTAGATGATTTGGATAT 173542 | |||| |||||| |||| || | ||||||| | | | | ||||| ||||||| Sbjct 18791 TCTTTTTTATCCACATACGGTATTTCAGCAATACGGCATCCCTTTGGATGAAATGGATAT 18732 Query 173543 CGATACAATGTATTCCGAATTAGTTTCTAATCCTAATGTTAAGAAACGTAAGTTAAATGC 173602 ||| |||||| | | | || || || || || ||| ||| | ||||| Sbjct 18731 GGATCAAATGTACGACCAGCTGGTAGGCAACCCCAAAGTCCGCAAAAAAAAGGTCAATGC 18672 Query 173603 TAGACGTATGTTAACTAAGATTGCACAAGTTCAGAAAGAATCAGGTTATCCATATTTCTT 173662 | | | | | ||| || || || || || ||| |||||||| ||||| || Sbjct 18671 CCGGCATTTAATGGTTAAAATAGCGCAGACCCAAAAGGAAAGTGGTTATCCGTATTTATT 18612 Query 173663 CTTGAAAACTAATGCTAACGAATATCATCCTTTGAAGAATTTGGGAGACGTTAAGTTTTC 173722 || ||| ||||| || || | ||| |||| | ||| |||| || || || || || Sbjct 18611 TTTTAAAGGCAATGCCAATAAAGAACATGCTTTACAAAATCTGGGGGATGTAAAATTCTC 18552 Query 173723 TAA 173725 ||| Sbjct 18551 TAA 18549 >seq48 Length=607718 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 139827 TATTTGCATATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATG 139886 ||||||| |||||||| ||||| || ||||||| |||||||| || |||||| | Sbjct 205070 TATTTGCCTATCGTGTGGCCGATCCGGAGCGATATGGCGTAGTTGAGTTTGATGAAAACA 205129 Query 139887 ATAACGCTGTTTCGATCGAAGAAAAACC-TTTGAATCCTAAATCTAATTACGCAGTACCA 139945 | || || |||| || ||||||||||| |||| || ||||| |||| || || || Sbjct 205130 AGAAGGCCATTTCTATAGAAGAAAAACCAACTGAA-CCAAAATCCGATTATGCTGTCCCG 205188 Query 139946 GGCTTATATTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCT 140005 || | ||||||||| | ||| || | || | || || | || ||||| || | Sbjct 205189 GGACTTTATTTCTATGACAACTCGGTGGTGGAGATTGCCAAAAACATTAAACCATCTCCA 205248 Query 140006 CGTGGAGAATACGAAATATCAGAT---ATTAACGCATAT 140041 | || || |||||||| ||||| | ||| |||||| Sbjct 205249 AGAGGGGAGTACGAAATTACAGATGTCAATAAGGCATAT 205287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701614756625440