Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq373 279 2e-70 seq25858 113 1e-20 seq662 113 1e-20 seq4 107 6e-19 seq663 96.9 1e-15 >seq373 Length=63667 Score = 279 bits (308), Expect = 2e-70 Identities = 575/850 (68%), Gaps = 38/850 (4%) Strand=Plus/Plus Query 16000 CAGCATGACCCCACGCCAACGCCGCCAACATAATGCAGGGTTGGGAGTTATAGCCACTGC 16059 ||| ||||| ||||| |||||||| | ||| |||||| || | | | | ||| | || Sbjct 5361 CAGAATGACACCACGTCAACGCCGTCTACACCGTGCAGGATTAGAAACTGTGGCCGCCGC 5420 Query 16060 GCCGCGTAAAAGTTACTTGGGAAGGTTTAC-CCCATTAACAAGCGTCCAGTCTTCCTGGA 16118 ||||| ||||| | |||| | || || ||| |||| || | ||||| |||||| Sbjct 5421 CCCGCGCAAAAGCTGGCTGGGCCGATTCACTCCCCTTAATG-GCATTCAGTCCGCCTGGA 5479 Query 16119 TGAAATCATTGCTCGCTATCTGGGGGGAGGGAGTAAGGGGCGAGACTGGCCCTCGAATGC 16178 | ||||| |||| || | |||||||| || | || || | ||| ||| || | | Sbjct 5480 TAAAATCTCTGCTTACTGTTTGGGGGGAAGGGATGAGAGGAGGTGCTGCCCCGCGTAAAC 5539 Query 16179 CACGAGGACATGCATGCTGGAATGAACTGAAGGGTAGTCGCTGGTCGGATAAAGCGCTGG 16238 || ||||||| |||||||| | |||||||| || |||||| |||||||| | | Sbjct 5540 CATCAGGACATTCATGCTGGCGAGGCATGAAGGGTGATCACTGGTCAGATAAAGCATTAG 5599 Query 16239 AACGTTTTACGGCTGCATTGAATCAGGCTCGTAGCGAGGGCTATAAAGGCCAACAGATAA 16298 |||| |||||||| ||| | | ||||| | || || || ||| || | ||| | Sbjct 5600 AACGCTTTACGGCAGCAATTGAGCAGGCAAGAAGTGAAGGGTATCGCGGGCGGCAGGCAT 5659 Query 16299 TGAATCGTGCTCATGCCATTCTATGGCCACAGACCACAATCAGT-GTTATCGATCAGGCT 16357 | | | || ||||||||| | ||||| || | ||| | || | || || || Sbjct 5660 TAAGCAGGGCGCATGCCATTTTGTGGCCGAAGCCTGCAA-CGGTCGCCATTGACGCTGCG 5718 Query 16358 ATGCGCAATGATGATGCTGATTTTGTTGAGCAGTGCGTATTACAGGCATTAGATGCTAAT 16417 || | ||||||| ||| |||||||| | || ||| | | ||| || | | Sbjct 5719 ATCACTGAGGATGATGTTGAATTTGTTGAACGATGTGTACTGGCGATATTTGAAACGGGT 5778 Query 16418 GATCCGGTCTACCTGGTAGGTGTTCAGTATTACACTACGCGCaaaaaaaTCTCAGATATT 16477 ||||| || || || || || ||| | |||||||| || ||||||||||||||||| || Sbjct 5779 GATCCTGTTTATCTCGTTGGCGTTAACTATTACACCACCCGCAAAAAAATCTCAGACATA 5838 Query 16478 ACTCGCGAGTTGCAGGCGATCGCGCCGTGGCTAACAGACAGTGAAGCGAGAAGGCGCGTT 16537 || || || | ||| | | || || ||| ||||||||||||| || | | | || Sbjct 5839 ACACGGGAAATACAGCTGGTGGCTCCATGGTTAACAGACAGTGAGGCCCGGAAAAGAGTG 5898 Query 16538 CGCTGGTGTCTGGATATATTCAAGGCAAAGGTTTTTCTGA-TGTCCCGAAACTTATTAAC 16596 |||||||| || || ||||||| ||||| | ||| || ||||| || ||| Sbjct 5899 CGCTGGTGCCTTGAAATATTCAGAGCAAAAGCTTTCCTTTCTGTCCATAAGGCGATT--- 5955 Query 16597 TGAGCAGGCATGAGTTAttttttttGATTATTT----GTGCTGTTTATCTATTTTTATGT 16652 |||| | ||||| ||||| | | | |||| | | Sbjct 5956 --------CATGCG-----------GATTAGCAAAAAGTGCTATGTTGCCTTTTTGGTAT 5996 Query 16653 TGAAAGTGAGCCaaaaaaaTGTTTAATGTATCCATGCTTGGCAGAGCTGCGACATGATAA 16712 ||||| || |||| ||| | |||| | ||||||||||||||||||| || Sbjct 5997 TGAAAATGGGCCAGAAAGTTAGATAATTCCTTCATGCTTGGCAGAGCTGCGGCACTCGG- 6055 Query 16713 CAGCGATGACAGGCCACAATCTGACAAATTCGAAAACCTCGCTACGGCGGGGTTTTTGCT 16772 |||||| | | || ||||||||| | |||||||| ||| |||||||||||||| Sbjct 6056 CAGCGACAAAAAGCGACAATCTGAATATAACGAAAACCCCGCCCGTGCGGGGTTTTTGCT 6115 Query 16773 TTCCGGCGATACGACAGGGGTATTCGCGAGATGCATTGCATCAGTACCCCTGTCATAGCG 16832 |||||||||||||||||||||||||||| || ||||||| ||||||||||||| || Sbjct 6116 TTCCGGCGATACGACAGGGGTATTCGCG----GC--TGCATCAATACCCCTGTCATATCG 6169 Query 16833 CCGAATTGCA 16842 || |||||| Sbjct 6170 TCGTATTGCA 6179 >seq25858 Length=775 Score = 113 bits (124), Expect = 1e-20 Identities = 236/346 (68%), Gaps = 7/346 (2%) Strand=Plus/Plus Query 22737 ATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCAATG-CGAAG 22794 ||||||||||| || ||| |||| || | || || || | |||||| | | | ||| Sbjct 435 ATGTGGGCGTCGTCGAGC-TTCGCCAAGCAGGGTCGCACAG-TCTTGGGCCAGGCCGAGC 492 Query 22795 AAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAAT 22854 |||| | | || || || || ||||| || | | ||||| || ||||||| ||| | Sbjct 493 AAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATT 552 Query 22855 GGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCT 22914 ||||||| | || |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 553 GGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCA 612 Query 22915 CCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTG 22974 |||| | || |||||||| || | || || |||||||| ||| | ||||| || | Sbjct 613 GCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCG 672 Query 22975 ATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCG 23034 | | | |||| || ||| | | || ||| ||| | | || ||| | Sbjct 673 ACAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGAAGATCAAGCTGCAGG 729 Query 23035 GTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGC 23080 | ||||| || || || ||||| || ||||| |||||||| ||||| Sbjct 730 GCCACGACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGC 775 >seq662 Length=1782 Score = 113 bits (124), Expect = 1e-20 Identities = 105/130 (81%), Gaps = 5/130 (4%) Strand=Plus/Plus Query 375 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCATT 434 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 636 GAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATG 695 Query 435 GATTTAAAAAGAATTAAAAC-AAGCACTTATGTGCAATGTCGT-AGACCGCCGAGAGGCG 492 | | |||||| ||| | ||||| || ||| |||||| | ||| || | || | Sbjct 696 GGAAAGATAAGAATAAAATCAAAGCA---ATAAGCAGTGTCGTGAAACCACCTACGGGTG 752 Query 493 GtttttttGT 502 |||||||||| Sbjct 753 GTTTTTTTGT 762 >seq4 Length=38681 Score = 107 bits (118), Expect = 6e-19 Identities = 189/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 14669 AAACTGGAATTGAATCTGGATGCTCAGGAACTGGAAATGCTGCGCCGGAATTGTGCTGCG 14728 |||||||| ||| || || | |||||| |||| |||||| ||||| ||||| | | Sbjct 31776 AAACTGGAGCTGATGCTCGACGAGCAGGAAATGGAGATGCTGGCGCGGAACTGTGCGGAG 31717 Query 14729 CGGCGACCAGGCAAAGAGCCATACGATATGGACGAGTATATCCAGATGCTGATCCGTCAG 14788 || || || || | ||||||||||| | |||||| ||| |||| ||||| ||| Sbjct 31716 CGTCGCCCGGGTAGGGAGCCATACGAACTTAGCGAGTACATCGCTCTGCTTATCCGCCAG 31657 Query 14789 GATGATGCGCGCGTGCGCCAAAAAATAAAGGCGATC--GGTCATCGTATTTGCGGGAAAT 14846 ||||||||||| |||||| | || || || ||| | || | | |||||||| | Sbjct 31656 GATGATGCGCGGGTGCGCGGACGCATCAAAGCCATCAGCGCCAAC--AAGTGCGGGAAGT 31599 Query 14847 GCGGTGAGTCTTTGCCAGTGGATTCATGCTGCATG-ACTGGCGACTCTGCGTGCTGGAAT 14905 ||| || |||| ||| | || ||| | || | || || ||||| |||||| | Sbjct 31598 GCGACGACATCCTGCCGGTGAAGTCCTGC-CCGTGCGCCGGTGATTCTGCCTGCTGGGTT 31540 Query 14906 AC-CAGTGGCTGGCACGAAATGAAATTA 14932 || ||| ||||||||||||| |||| || Sbjct 31539 ACGCAG-GGCTGGCACGAAACGAAACTA 31513 >seq663 Length=5275 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2698 CAAGGGATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTAC 2757 Query 431 CAT 433 ||| Sbjct 2758 CAT 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154879267739584