Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq501 114 2e-20 seq3869 93.3 6e-14 seq3368 87.8 3e-12 >seq501 Length=12468 Score = 114 bits (126), Expect = 2e-20 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 |||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| || Sbjct 4781 GGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 4839 Query 198995 TCCAGTAGGGGCCACCAGATAAA 199017 ||||| ||||||||||| ||||| Sbjct 4840 TCCAGCAGGGGCCACCAAATAAA 4862 >seq3869 Length=8584 Score = 93.3 bits (102), Expect = 6e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 119879 CAGCTTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTT 119938 |||||| ||||| || || | ||| || | || | ||| | | || ||||| Sbjct 4356 CAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACG 4415 Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| || |||| || ||||| | || || |||| ||||||||| ||||| || || Sbjct 4416 GTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGT 4475 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | |||||| || | | || ||||| ||| || ||||| || ||||| ||||| Sbjct 4476 TGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTT 4535 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 |||||| || || |||||| ||| ||||||||| ||| || || ||| ||| Sbjct 4536 GTAGAACGGAATGCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGC 4595 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTG 120157 ||||| || || || || || || || || || || Sbjct 4596 GCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTG 4634 >seq3368 Length=6287 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 199779 TTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTC 199837 |||||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||| Sbjct 3884 TTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTC 3825 Query 199838 GAGTCCTGTATCACCGACCACTT 199860 || |||| | || ||||||| || Sbjct 3824 GAATCCTCTCTCGCCGACCAATT 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741187988776760