Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq2100 165 3e-36 seq345 141 3e-29 seq12 116 1e-21 seq3094 113 1e-20 seq18850 93.3 1e-14 >seq2100 Length=19628 Score = 165 bits (182), Expect = 3e-36 Identities = 342/509 (67%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 45488 AAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAAC 45547 ||| | || || || || || ||||| | || | ||||||| |||| |||| |||||| Sbjct 19120 AAAAATGACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAAC 19179 Query 45548 TTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTAT 45607 ||||||| || |||||||| ||||| || || | ||| | ||||| ||||| || Sbjct 19180 CTGCAGGAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCAT 19239 Query 45608 GAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTG 45667 |||||||| ||||| | | ||||| || || | |||| |||| ||||| || Sbjct 19240 GAACTGCTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTC 19299 Query 45668 ACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAA 45727 || || |||||||||||||| ||||| || ||||| || || || |||||||| || Sbjct 19300 ACCATCTGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAG 19359 Query 45728 TGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAG 45787 ||||| || ||| | | | || || ||||||| || |||| | || Sbjct 19360 TGGCGTTCCTGGCCTGCGCCGGATGGCCGCCATATCGACCAGATCAGCACGGTGATGAAC 19419 Query 45788 GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAG 45847 | | || | ||||| |||| || ||| | | || || |||||||| | || Sbjct 19420 CAGCTGAAAAACGACCCGGACTCCCGCCGGATCATCGTCTCGGCATGGAACGTCGGCGAG 19479 Query 45848 TTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGC 45907 ||| ||||| | || | || || || | ||| ||||| |||||||| | ||| Sbjct 19480 CTGGATAAAATGGCGCTGGCGCCGTGCCACGCCTTCTTCCAGTTCTACGTCGCCGACGGC 19539 Query 45908 CGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAAC 45967 | | || ||| | | | |||||||| |||| || || || ||||||| || Sbjct 19540 AAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCGATGTGTTCCTCGGCCTGCCGTTCAAT 19599 Query 45968 ATCGCTAGCTATGCGCTGTTGACACATAT 45996 ||||| |||||||||||| || ||||| Sbjct 19600 ATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 >seq345 Length=175672 Score = 141 bits (156), Expect = 3e-29 Identities = 341/515 (66%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || ||||||||| || || |||||| ||| |||| || | || | Sbjct 150405 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 150464 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 | || || || | ||||||| || || ||||| || || ||||| | || ||| Sbjct 150465 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 150524 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || ||||| | |||||||| ||||| | |||| | |||| || || |||||||| Sbjct 150525 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 150584 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| || |||||||| || |||||||||||||| || |||| ||| || ||||| Sbjct 150585 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 150644 Query 45734 TCGTGGAAAGGGGCTGACG---GGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAA 45790 || ||| | | | |||| || | | |||| || |||||| || | | | Sbjct 150645 TCCTGGCCTGCGCCCGACGGCCGGCATA---TCGATCAGATTGCGAATCTCGTCAGTGCG 150701 Query 45791 ATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTG 45850 || |||| || || | |||||||| || | || ||| ||||| ||| | Sbjct 150702 ATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTC 150761 Query 45851 GGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGG 45910 | |||||| | |||| || || || | | || ||||| ||||| || | || | Sbjct 150762 GATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAG 150821 Query 45911 TTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATC 45970 | || ||| | | ||||| || | ||||| ||||| || ||||||| || ||| Sbjct 150822 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 150881 Query 45971 GCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| ||| |||| | ||||| || || Sbjct 150882 GCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 150916 >seq12 Length=339259 Score = 116 bits (128), Expect = 1e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 |||||||||||||||| | | || |||| |||| || | || ||| | ||||| | Sbjct 190676 GGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAG 190735 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || || || || || || ||||| | ||| | || || || | |||||| ||| Sbjct 190736 GCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAACTGATCT 190795 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||||| || || || ||| || |||| || | | || ||| | ||| |||| Sbjct 190796 GGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGG 190855 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | |||||||| ||||||||||| || || ||||| | || || | |||||||| || | Sbjct 190856 ATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGCGTTCAT 190915 Query 45738 GG 45739 || Sbjct 190916 GG 190917 >seq3094 Length=9505 Score = 113 bits (124), Expect = 1e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46040 ACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACG 46099 ||||||||||| ||| |||||| || ||||| || || | || |||||||| | Sbjct 9499 ACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGACCAACCTGCAGCTAAGC 9440 Query 46100 CGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGAC 46159 ||||| ||||| |||||||||||||| || |||||||| |||||| |||| || || ||| Sbjct 9439 CGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGATTTTCGAC 9380 Query 46160 TATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCT 46219 || | || || || || ||| || || || ||||| |||| ||||| || || Sbjct 9379 TACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAAAGCGCCG 9320 Query 46220 GT 46221 || Sbjct 9319 GT 9318 >seq18850 Length=281 Score = 93.3 bits (102), Expect = 1e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 45656 GAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATC 45715 ||||| || || ||||| ||||||||||||||||||||| |||||| |||||||| || Sbjct 95 GAGAACGGGGTCACGATCTGGGACGAGTGGGCCGATGAATCCGGCGACCTCGGCCCGGTC 154 Query 45716 TACGGCGCGCAATGGCGGTCGTGG 45739 ||||| | ||| ||||| |||||| Sbjct 155 TACGGGGTGCAGTGGCGTTCGTGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157697522756078