Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq252 217 4e-52 seq1687 141 3e-29 seq4 136 1e-27 seq3840 96.9 1e-15 >seq252 Length=20613 Score = 217 bits (240), Expect = 4e-52 Identities = 698/1048 (67%), Gaps = 74/1048 (7%) Strand=Plus/Minus Query 34133 TTGCCTTATCGCCGGCCAGCGGAACGTTTATCACCTGCTGCGCGTTAACCTTGC---CAT 34189 || ||||| ||||| |||| ||||||| | |||||||||| || | |||| ||| Sbjct 5670 TTCCCTTAAGGCCGGGCAGCCGAACGTTGA--ACCTGCTGCGA-TTGATATTGCTGTCAT 5614 Query 34190 CTCATCCCGGTCTTCGTATGCCCCGGGCGGCTACTTCGTGGGCGTCCTGCCTTGATGACT 34249 ||||||| | |||||||||| | ||| |||||||||||||| |||||||| |||||| Sbjct 5613 CTCATCCGGTGTTTCGTATGCCGCCGGCAGCTACTTCGTGGGCTTCCTGCCTCGATGAC- 5555 Query 34250 CGTTGCTGCGTTTGATAGGTTAAGTATTATCGATTCAATCGATACATGTCAATTAAATTT 34309 || | | || | |||||||||||| || | | | ||||||||||| | Sbjct 5554 -GT-----CATAGGACGGAGATAGTATTATCGATATAAACTACAACTGTCAATTAAAACT 5501 Query 34310 GATGATTAATTTTACAGGGAAGATTAAGAAAGCGAGATGTGGGTGAATTAATGACATaaa 34369 ||||||| | || ||| ||| | | | ||| | ||| | | |||| ||| Sbjct 5500 GATGATTTAAATTTCAGA----ATT--GGATGTGAGGTA-GGGAGCA-----GACACAAA 5453 Query 34370 aaaaCCGCCAGTTAAGGCGGTTAGTAGTTTTAAAGCTGGTTTAGCGAGAAGGAGGCTCGA 34429 ||||||||| | ||||||| | || | ||| || ||| | || || Sbjct 5452 AAAACCGCCCG--AAGGCGGCGATTA----TGAAGGGGGGGAAGCCTGTTCTAGTCTT-- 5401 Query 34430 TTTTTCTGCGTCTTTGG-TATTCAGCCATGAAATCGTCTAGTTCTTGAAGTCTGGTGCCT 34488 | |||| | ||||| || || ||||||| | || ||||||| || || | || Sbjct 5400 TCTTTC-GTTTCTTTAAATACTCTTTCATGAAAGCATCGAGTTCTTCCAGCCT--TAACT 5344 Query 34489 GCC--AGCTCAATAAAACGGTCTTGTTCAACAGTCGGTAGCTGATCAAATATTTCTAAGA 34546 || | | | | || | || || || || |||||||||||| | ||||||| || Sbjct 5343 GCATTAACCCGACGAATCTTTCCTGCTCCACTTGCGGTAGCTGATCGTAAATTTCTATGA 5284 Query 34547 GCCGCTTTTGTCGGTCATTGAGATCTGT---TGGACCACCTT--GTGTTAGACG--TTCA 34599 || ||||| ||| || | | | | || | ||| | | | | || | || Sbjct 5283 GCT--TTTTG---GTCTCTGGGGTAAGGACATAGAT-ATCTTCCGAGCTTGGCGGCTGCA 5230 Query 34600 GGCACATCCGATTCCTCATCATCCTCCATGAAGAACCAATACAACGGCTTACCCGTGGCC 34659 | | || ||| || ||||| |||||| ||||||||||| || || || || Sbjct 5229 GCGTC-TC---TTCATCTTCATCTGTCATGAAAAACCAATACAAAGGTTTTCCTGTTATA 5174 Query 34660 TTAGGTAACAACTCTAAGATATCTTTTCGGGGAAGAATGCCGGACTGACACCAACCATTA 34719 | ||| | ||| | || ||||||| ||| || || || | ||||||||| ||||| Sbjct 5173 TCAGGAAGTTGCTCAAGCATTTCTTTTCTGGGGAGGATTCCAGCCTGACACCAGCCATTC 5114 Query 34720 ACTGATTGAGAGGTAGCGCCGACTCTACGACCTAACTCAGATTGGGTGATCCCAGTCTCA 34779 |||||||| || || || |||| || || || | || ||||| | || || ||||| Sbjct 5113 ACTGATTGGGATGTCGCACCGATCCTCCGCCCCAGTTCTGATTGAGACATTCCTATCTCA 5054 Query 34780 T-TAAGCACTCTTTGTAAACGCTCTCCAAAGTTCATTTTTCGTTCTCGC--ACAATTACA 34836 | |||| |||| ||| | || | |||||||||| | ||| | | | | |||| ||| Sbjct 5053 TCTAAG-ACTCGTTGCAGTCGAACACCAAAGTTCA-TCTTCATCCACCCAAACAAACACA 4996 Query 34837 TG-GTTTCATTATACAGATTTTTTCTGTAGGAATGGCTATCGAAATAATTTGACAGTATC 34895 || | |||||||||||||||||| ||| | ||||| ||| |||||||| |||| Sbjct 4995 TGAGAAAGATTATACAGATTTTTTCTTCAGGCCT-CATATCG-AATGATTTGACACTATC 4938 Query 34896 GATTAAATTTGAATAATTGGTTGT----ATCTTCA---CTCAATGAGACCGACCAATGAA 34948 || || ||| ||| || | || | || || | || || | || ||||| Sbjct 4937 GAAATAAACTGATTAAACTGTAATTCAAATTTACAGTTCTTAGTG-GAGCAACGCATGAA 4879 Query 34949 AGTAACTGTTCAACGCAAGATCCTTTCCGTGTGTAGCCAGGCTGAGTTGGGACGCCGACT 35008 | | ||||| || | ||| ||||||||||||| | || | ||||| || || Sbjct 4878 GCCATCACTTCAAAAAAAATTACTTGCCGTGTGTAGCCAATCGGAAATCGGACGGCGGCT 4819 Query 35009 TGGTCGCCGTGCTCAGACCGTTAACGGCTGGTTTAAAAACAAAGTTCCCGGCGAACTTGT 35068 | ||| || || || || || || || ||||| ||| | |||||||||||||| | || Sbjct 4818 TAATCGGCGAGCACAAACAGTAAATGGTTGGTTCAAACATAAAGTTCCCGGCGAGTTGGT 4759 Query 35069 AGTTCGAGT-GGCAAGAGCTATTGACTGGAAAGTCACCCCACACGAACTGCGTCCTGATC 35127 | ||| | ||| || | || |||||||| || || || ||||| | || |||| Sbjct 4758 TCTGAAAGTCAGTAAG-GCATTGGAGTGGAAAGTTACTCCGCATGAACTCAGACCAGATC 4700 Query 35128 TCTACCCAAACCCAACCGATGGCTTACC 35155 |||||||||||||||| ||||| ||||| Sbjct 4699 TCTACCCAAACCCAACGGATGGATTACC 4672 Score = 181 bits (200), Expect = 3e-41 Identities = 196/257 (76%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 32287 GATCAGCGCGAAAATAGCGGCGCGGGAATAATCCAGGATACCGGGCGTTGCGCGAAGTAC 32346 |||||| || ||||| || || ||||||||||| ||||| || || || || | | | Sbjct 7962 GATCAGTGCAAAAATCGCTGCACGGGAATAATCAAGGATGCCTGGTGTGCTCCGTAATGC 7903 Query 32347 TGCGGACCATTCTTTGAACGGACTTTCCTTTTTCTTTACGATTTCTTTTGCGCGACGGTA 32406 ||| ||||||||||| || |||||||| || |||| ||| ||||| || ||||| |||| Sbjct 7902 TGCAGACCATTCTTTAAATGGACTTTCTTTCTTCTGTACTATTTCCTTCGCGCGGCGGTG 7843 Query 32407 AAC-GCTGCCAGGTAGCTCATAGATATTAAAGTCCATAGGCAAAGTGGCCATTGCAATCT 32465 || | |||| || | | |||||| | ||| |||||||||| || || | || |||| Sbjct 7842 GACTGATGCC-GGAAAATTATAGATGTCAAAATCCATAGGCATCGTTGCAAGAGCGATCT 7784 Query 32466 CTACATCCAGAGTATCGAGAGTGTGTTCGTAATCAGGGTTACGGTCAGTCTTATTGCCAC 32525 ||| |||||||||||| || | || | ||||| || || |||||||| || || || | Sbjct 7783 CTATATCCAGAGTATCCAGCGAATGCTGATAATCCGGATTGCGGTCAGTTTTGTTACCGC 7724 Query 32526 CGCCAGCGTTGGCGCCG 32542 ||||||| ||||||||| Sbjct 7723 CGCCAGCATTGGCGCCG 7707 >seq1687 Length=800 Score = 141 bits (156), Expect = 3e-29 Identities = 139/177 (79%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 45770 CACTACCACGGTAACGCCGTGAAATACAAAGAGCAGCGCGATACCGTTACTCATA-AGCT 45828 || |||| | ||||||| | | ||||||| |||||||| | | | || | | || Sbjct 544 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACT 602 Query 45829 GGCGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCATGATGTTGCTGCGCT 45888 | ||||||||||||| ||||||| |||||| || ||| |||| |||||||||||| || Sbjct 603 GAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACT 662 Query 45889 CGACGCCAGATACACGAAGGAATTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 45945 || | | |||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct 663 GGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq4 Length=38681 Score = 136 bits (150), Expect = 1e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 30133 ACTGCGTTGACCAGTTGTGCCTCGTAACCAAGAACACCGTTAACCAGGTGTGTTTTCTGA 30192 || ||||| ||||| || || || |||||||| |||||||||| ||||||||||| Sbjct 742 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 683 Query 30193 GCCACAGCGTAAGGGTTCATGCCCCATTGCATAGCCTGCATGACGATAGCCATACAGTCG 30252 ||||||||| | |||||||||||||| ||| ||||||||| | ||||| ||||| Sbjct 682 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 623 Query 30253 GCTGGTTTCCCTGCAAGGTGTGCCGGTACCGTCACCTGTGAGTCTGCCATCAGGTTAGCG 30312 || || || ||||| ||||| || || || || ||| ||| ||||||||| | ||| Sbjct 622 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 563 Query 30313 AAA 30315 ||| Sbjct 562 AAA 560 >seq3840 Length=990 Score = 96.9 bits (106), Expect = 1e-15 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 47077 GCGTTGTATCGTCGCAGTANNNNNNNATTAACAATGACCGCAGCCCTTAATGGGAGCTCC 47136 ||| ||||||||||| ||| |||||| ||||||| ||||| | |||| ||| Sbjct 608 GCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCG-ACGGGGAATTCC 666 Query 47137 TTCTGCGTGAGTGTGCAATGATAATCAATAACGATGCATACCGGGGTTTGCAGCTTTTTC 47196 |||||||||||||||| |||||||| ||||||||| |||||| ||| | | | | Sbjct 667 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTTACTGTGCTGAC 726 Query 47197 GATGGCTGGTTTATCCCTCATTGCTCGCCATCTCGATGCGGGGGTAGAAGAAATCGAGAG 47256 || || ||| ||||||| | |||| | || |||| ||| ||||||| || || Sbjct 727 AGACGCAGGGTTA-CCCTCATAG-TCGCTTTTCCGGTGCGATGGTGGAAGAAACCGGGA- 783 Query 47257 TGTTT 47261 ||||| Sbjct 784 TGTTT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151363646555558