Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq40 392 9e-105 seq278 277 5e-70 seq1687 178 4e-40 seq23 104 7e-18 seq62 89.7 1e-13 >seq40 Length=14228 Score = 392 bits (434), Expect = 9e-105 Identities = 237/250 (95%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 23926 AAAAAACCGCCATCAGGCGGTTTTGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 23985 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2861 AAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGTTAC 2920 Query 23986 GTCTGCATGTGCTATCTGCGCCCATATCATCCAGTGGTCATAGCAGTCGTTGAAGTCCTC 24045 |||||||||||||||||||||||| | |||||||||||||||||||||| ||| || ||| Sbjct 2921 GTCTGCATGTGCTATCTGCGCCCACAGCATCCAGTGGTCATAGCAGTCGCTGATGTTCTC 2980 Query 24046 TGCTTCGATAACCCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGAAAGTGCAT 24105 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2981 GGCTTCGATAACTCTGTTGAATGGTTCTCCATTCCATTCACCTGTGACTCGGAAGTGCAT 3040 Query 24106 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGA 24165 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 3041 TTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCA 3100 Query 24166 GTGCGAGGAT 24175 |||||||||| Sbjct 3101 GTGCGAGGAT 3110 >seq278 Length=18759 Score = 277 bits (306), Expect = 5e-70 Identities = 552/807 (68%), Gaps = 22/807 (3%) Strand=Plus/Minus Query 7608 TTTGACGGGCGCCCTGTTTTTCTTGAAGAGCAGGATCTCCCTGCCGTGGCTGTATACCTT 7667 ||||| || ||||| | | || |||| ||| |||| | || || | || || || || Sbjct 11024 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAATTGCCGTTTATCTC 10965 Query 7668 TCTGACGCGGAGTACACCGGCGACTCGCTTGACGAAGATTCGTGGCAGGCGGTTGTTCAC 7727 | | ||| || ||||| ||||| ||| ||| ||| | |||||||||| | || Sbjct 10964 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGTGATACCTGGCAGGCGGAGCTGCAT 10905 Query 7728 ATCGAGGTATTTCTTAAAGCCTCC--AGC--CCCGACAGCGCGCTTGATTCCTGGATGGA 7783 ||||| || || || |||| | || || || | ||| ||||| |||||||| Sbjct 10904 ATCGAAGTTTTCCT----GCCTGCTCAGGTGCCGGATTCAGAGCTGGATTCGTGGATGGA 10849 Query 7784 AGAGAAAGTGTATCCGGCAATGGCCTTCATCCCGGGTCTGACCGAACTGGTCG--AG-AC 7840 | ||||||| ||| | ||||||| ||| | || || || || | Sbjct 10848 GTCCCGGATTTATCCGGTGATGAGCGATATCCCGGCACTGTCAGATTTGATCACCAGTAT 10789 Query 7841 GTTCACCCCGCAG-GGTTATGACTATCAGCGGGATGATGAAATGGCCACCTGGGGTTCAG 7899 | | || || || |||||||| | ||| || ||||| || | ||| |||| | Sbjct 10788 GGTGGCC----AGTGGCTATGACTACCGGCGCGACGATGATGCGGGCCTGTGGAGTTCTG 10733 Query 7900 TCGATTTCACGTACTTAATCACCTATTCAATTTAAGAGGTACTTATGCCTACTCCAAACC 7959 |||| | ||||| | || |||||| ||| | |||| ||||||| ||||| | Sbjct 10732 CCGATCTGACGTATGTCATTACCTATGAAATGT--GAGGACGATATGCCTGTACCAAATC 10675 Query 7960 CGCTGGCCCCCGTGAAAGGTGCCGGTACCACACTCTGGCTTTACACCGGAACGGGCAACG 8019 | || |||||||||||||| ||||| || ||| |||| | ||| | ||| || Sbjct 10674 CAGCAATACCGGTGAAAGGTGCCGGAACCACCCTGTGGGTTTATAACGGGAGCGGCGACC 10615 Query 8020 CTTTCGCTAACCCACTCTCGGATATCGACTGGAACCGCCTGGCGAAAATTAAAGAGCTGA 8079 ||| || ||||| || || || | |||||| || ||||| ||| ||||||| |||| Sbjct 10614 CTTATGCGAACCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGA 10555 Query 8080 CGCCGGGCGAAATGACCGCAGAATCGTATGACGACACTTACCTCGACGACGAGGATGCCG 8139 |||| |||||| ||||||| || || |||||||||| ||| ||||| || || ||||| | Sbjct 10554 CGCCCGGCGAACTGACCGCTGAGTCCTATGACGACAGTTATCTCGATGATGAAGATGCGG 10495 Query 8140 ACTGGAACGCGACGGCCCAGGGGGCAAAATCTGCTGGCGATACCTCGTTCACCCTCGCCT 8199 |||||| |||||| | |||||| ||||| || || |||||| ||||| || || | Sbjct 10494 ACTGGACCGCGACCGGGCAGGGGCAGAAATCCGCCGGAGATACCAGCTTCACGCTGGCGT 10435 Query 8200 GGAAGCCGGGCGAAGAAGGGCAAAAAGACCTTGTCGCATGGTTTATTGATGGCTCAGTA- 8258 ||| ||| || || | ||||| | | || | || ||||||| ||| || | | || Sbjct 10434 GGATGCCCGGAGAGCAGGGGCAGCAGGCGCTGCTGGCGTGGTTTAATGAAGG-TGA-TAC 10377 Query 8259 -CGTTATTACAAAATCAAATACCCGAACGGTACCGTCGACGTTTTCTGTGGCTGGTGCAG 8317 ||| || |||||| | ||||||||| || ||||| || ||| |||||||| ||| Sbjct 10376 CCGTGCCTATAAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 10317 Query 8318 CAGCCTGGGTAAAGCCATTCCGGCAAAAGAGGTCATTACCCGTACAGCGAAAATCACCAA 8377 ||| | ||||| || | |||| || || || || |||||||| | ||| ||||||| Sbjct 10316 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGTACGGTGAAGGTCACCAA 10257 Query 8378 TACCGGCAAGCCGGAACTGGCAGAAGA 8404 | ||| ||| | |||||||||| Sbjct 10256 TGTGGGCCGTCCGTCAATGGCAGAAGA 10230 Score = 134 bits (148), Expect = 4e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || ||| Sbjct 6880 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAA 6821 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| |||||||| || |||||| Sbjct 6820 TTTGTCTTCACAAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTCTACCGGCTGATG 6761 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | |||||| ||||| Sbjct 6760 CGCGGCTATGCCACCGGTGGTTATGTCGG 6732 Score = 131 bits (144), Expect = 5e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 11569 CTTCTCACCCTTCAGGCCCAGCTTAAAACGCTCGAGCAGCATATCAGCGTAAACGACGTT 11628 || || || |||||||| | || ||||| ||| ||||| | | | ||| || Sbjct 7663 CTGCTGACGCTTCAGGCTGAACTCCGGACGCTGGAGAAGCATGCCGGAGCAAATGAGAAA 7604 Query 11629 ATCAGCAAACAGCGTCAGGATCTCTGGCAGACTGAAAATCAGTTCACCGTTCTGCAGGAG 11688 |||||| | ||||| | |||| | ||| || | || | ||||||| | || ||| ||||| Sbjct 7603 ATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTACTGGAGGAG 7544 Query 11689 GCCGCGGGGCGTCGTCAGCTTACGGCGCAGGAAAAATCACTGCTGGCGCACAAGGAAGAA 11748 || ||| ||||| ||||| | || ||||| ||||| ||||||||||| || || || Sbjct 7543 GCGGCGCAACGTCGCCAGCTGTCCGCACAGGAGAAATCCCTGCTGGCGCATAAAGATGAG 7484 Query 11749 ACGCTCGAGTACAAGCGGCAGCTGGCCGACCTGGGAGATAAGGTT 11793 ||||| |||||||| || |||||||| | || || || |||||| Sbjct 7483 ACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTT 7439 Score = 127 bits (140), Expect = 6e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9106 GTTACCGCGGAAAAGCCCTTGCCAGCGAGCTGAAGTTTGTCCTGAATCTGGCGCGCGAGT 9165 ||| | |||| |||| | | | | ||||||| |||| |||||| |||||||||||| Sbjct 9544 GTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGGCGCGCGAGA 9485 Query 9166 TCGGTCGACCCGACTGGCGCGCCATGCTGGCTGGGATGACTTCCAGTGAACTGGGCGACT 9225 | || |||||||||||||| |||||||| || |||||| | |||| || | ||||| Sbjct 9484 TGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGTATGCCGACT 9425 Query 9226 GGCACCTGTTCTACCGGGAGCATTATTTTCAGGACGCGCAGCTCGATGCGCATTTCTCCG 9285 |||||| || ||| | ||||||||||| || | | ||| ||| ||| || |||| Sbjct 9424 GGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGCACTTTTCCG 9365 Query 9286 GGCTGCTTTATTCCATCTCCACTCTTTTCTTCCGCGATCCGGA 9328 ||||| || || | || || || ||| |||||||||| Sbjct 9364 GGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 9322 >seq1687 Length=800 Score = 178 bits (196), Expect = 4e-40 Identities = 109/116 (94%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42085 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 42144 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 42145 TGGGCGGTTAATCATTACCGTGATAACGCCATTACCTATAAAGAACAGCGCGATAA 42200 ||||| |||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAA 587 >seq23 Length=8492 Score = 104 bits (114), Expect = 7e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 22061 TCCTATTATCGGCACCATTTAAATCAATGAGTTACCTCGCATTTAAGTAAACCACGTTCT 22120 ||||||||||| ||||||| ||||||| |||||||| | |||||| || |||||||| | Sbjct 159 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 102 Query 22121 CCTCTTGTGCCGTATTTGTGCCATTG 22146 |||| ||||||||||||||||||||| Sbjct 101 CCTCCTGTGCCGTATTTGTGCCATTG 76 >seq62 Length=1393 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22032 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 22083 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141015116500668