Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq11225 102 3e-17 seq360 93.3 2e-14 >seq11225 Length=5908 Score = 102 bits (112), Expect = 3e-17 Identities = 214/311 (69%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 |||||||||||| || ||||||||||| ||| | |||||||||| |||||| ||| Sbjct 5310 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 5251 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 || |||| |||| | | ||||| ||| || || | ||| | | || || || Sbjct 5250 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 5191 Query 9824 CAGCGGCGACTTCA-AAGAAGTG-ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTC 9881 | |||| | || || || | ||||||||||||||||| | ||||||||| || Sbjct 5190 GACCGGC--CAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATC 5133 Query 9882 GCCGAGATCGTCGACGAGCACCTGCG-CAAGGGCGCATCGGT-CTACATCGAGGGGCGCA 9939 ||||| |||| | ||| | ||||| ||||| || | || |||| |||| || Sbjct 5132 GCCGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGC--CAGTGCTACGTCGAAGGCACTC 5075 Query 9940 TCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCG 9999 || || || |||| ||| || ||| | | |||||||| ||||||||||||| Sbjct 5074 TCCGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCG 5018 Query 10000 CCGACAAGATG 10010 |||| || || Sbjct 5017 TCGACCAGGTG 5007 >seq360 Length=29890 Score = 93.3 bits (102), Expect = 2e-14 Identities = 218/328 (66%), Gaps = 11/328 (3%) Strand=Plus/Minus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||| ||||| || || |||||||| ||||| || ||||||||| ||||| | || Sbjct 27569 CGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCC 27510 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGA-TCGTTACAAGGACAAAG 9822 || |||| ||| || ||||| || || || || |||| || | | | |||| Sbjct 27509 AAGTGGCGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTG-ACAAGC 27451 Query 9823 CCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTCG 9882 | |||||| | ||||| |||||||||||||||||| | | |||||| || | Sbjct 27450 AGACCGGCGAAATGAAAGAGCAGACCGAGTGGCACCGCGTTGTGCTGTTCGGCAAACTGG 27391 Query 9883 CCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCA 9942 | || ||| | ||| | ||||| || ||| | ||| ||||| || || | | Sbjct 27390 CGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATTGAAGGCCAGCTGC 27331 Query 9943 AAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGA---------GA 9993 || || |||||| ||||||||||| ||||| ||||| ||||| || Sbjct 27330 GTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGA 27271 Query 9994 TCGTCGCCGACAAGATGCAGATGCTCGG 10021 ||| | || || ||||||||||| || Sbjct 27270 ACGTGGGCGGCACCATGCAGATGCTGGG 27243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201252342035211