Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq4 370 3e-98 seq12773 187 7e-43 seq2286 86.0 2e-12 >seq4 Length=38681 Score = 370 bits (410), Expect = 3e-98 Identities = 527/736 (72%), Gaps = 13/736 (2%) Strand=Plus/Minus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGT----GAAAACAGGTT 824 |||||||| ||||||||| ||||| ||||||||||| |||| | || || Sbjct 30267 TGGCAGGCAGACGCATTCCGCGAGATACGCGATCACCT--GCAGAACCCGGCGACGCGTC 30210 Query 825 TG-AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCA 883 |||| ||| |||| ||| | ||||| |||||||| |||||||| || || |||||| Sbjct 30209 ACCAGCCGTTGATGCTGGCCCGCGCATCCGGCCACGGCATCGGCAAGTCAGCTTTCATCT 30150 Query 884 GCATGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCA 943 ||||| || |||||| | || || ||| | || || ||||| |||| Sbjct 30149 CGATGCTGATTAACTGGGGCATGTCGACCTGCGAGGACTGCAAGGTGGTGGTGACCGCCA 30090 Query 944 ACACCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCA 1003 ||||||| | ||||||||||||||||| |||||||| || ||||||| || || Sbjct 30089 ACACCGACAACCAGCTGCGCACCAAGACATGGCCGGAAATCATCAAATGGT--CGAATCT 30032 Query 1004 GCCTGTTCTCGCAC---TGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCA 1060 | || | | || | ||||||| ||| ||||| |||| | ||||| Sbjct 30031 GGCTAT-CACGAAAGAGTGGTTCACCTGCACCGCCACGGCGATGTACAGCAATGACCCAG 29973 Query 1061 AACACTCCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCAT 1120 ||| | |||||| || ||||| | || ||||| || |||||| ||||| | Sbjct 29972 GCCACGACAAGCGCTGGCGAGCTGACGCAATACCGTGGTCTGAGCACAACACAGAGGCGT 29913 Query 1121 TCGCCGGCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACA 1180 ||||||| |||||||||||| | ||||| |||||| || | |||||||| || || |||| Sbjct 29912 TCGCCGGGCTGCACAACGAGCGTAAGCGTATCATCGTGGTATTCGATGAAGCGTCCAACA 29853 Query 1181 TCAGCGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCA 1240 | || |||||||||||| ||||| ||||||||||| ||||| |||| || || | Sbjct 29852 TTGCAGATCTGGTGTGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTA 29793 Query 1241 TATGGGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCA 1300 | |||||||| || || ||||||||||| ||||| || || |||||||| |||||||||| Sbjct 29792 TCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCA 29733 Query 1301 AGTTCAAGCACCGGTGGAAGTGCAAGCAGATCGATGCCAGGACTGTTGAAGGCACCAACA 1360 ||| ||||||||| ||||||||| |||||| || | | || || |||||||| |||| Sbjct 29732 AGTACAAGCACCGCTGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACAAACA 29673 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || |||| ||||| ||| |||| |||| || ||||| ||||||||| |||| Sbjct 29672 AGCAGCAGCTGCAGAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCC 29613 Query 1421 GTGTGCGCGGCATGTTCCCGAGGGCTTCCGCATTGCAGCTGATACCAACTGACTGGGTGG 1480 | ||||| || || ||||| || || | | | ||| | || ||||| | | | Sbjct 29612 GCGTGCGGGGGATCTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAG 29553 Query 1481 CCGAGGCCATGAAGCG 1496 ||||||||||||||| Sbjct 29552 ACGAGGCCATGAAGCG 29537 Score = 95.1 bits (104), Expect = 3e-15 Identities = 176/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||| | ||||||||||||||||||||||| || ||| | || ||||||||| | | ||| Sbjct 24287 AACATTATCGACGCTGGCGGTACCGGCACTGATAACACCTCTATCTGGCTGGTGGTATGG 24228 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCT---GATCCAC 6260 || | |||||| | || ||||||| ||||||||| | | || ||||| || || Sbjct 24227 GGTGAAAACACCGTTCATGGCATCTTCCCGAAAGGGCAGAAAGCTGGCCTACAGACTCAG 24168 Query 6261 AACGACCTAGGCGAGATTGACGCGTTCGATGCCAG-CATG--AACCGCTTCCGCGCCTAC 6317 | |||| || ||| | | |||||||||| || || | || | ||| Sbjct 24167 A---ACCTTGGTGAGCAAACCCTGGTCGATGCCAGTGGTGGTAA---ATACCAGGGCTAT 24114 Query 6318 GGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGT 6377 | ||| ||| ||||| | |||| | || ||| ||||||||||||| || || Sbjct 24113 CGTACCCATTACAAATGGGATAACGGTCTGGCACTGCGTGACTGGCGCTACGTTGTGCGC 24054 Query 6378 ATCGCAAACATCGA 6391 ||||| |||||||| Sbjct 24053 ATCGCCAACATCGA 24040 >seq12773 Length=2517 Score = 187 bits (206), Expect = 7e-43 Identities = 316/451 (70%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 31512 GGTGGTGATGTTCAGCAGGGCGCACATGACGTAGCGCTTGCCGTAGCTGGTGGTCGAGCC 31571 ||| |||||||||||||| || ||||| |||||||||||||| ||| | || | ||||| Sbjct 202 GGTCGTGATGTTCAGCAGCGCACACATCACGTAGCGCTTGCCATAGGTAGTCGATGAGCC 261 Query 31572 GACGGCCTGGACGGCGTTCTTGCTGCCGCT---GGTGTCGAGCGGGAGAAGCATGGTTGT 31628 || ||||| ||| |||| || || | | | || | ||| || |||||| || Sbjct 262 AACAGCCTGTACGTCGTT---GCGACCTTTTCCGATATCAATCGGCAGGCTCATGGTGGT 318 Query 31629 CTCTTCCCGGTGGCCGGCGCGGTGCATCAGGATGCCAGTCACGCTAAGCCCGGCCTGGGC 31688 | || |||||||| | |||||||||| ||| ||||| || || | | | | || Sbjct 319 TTGCTCGCGGTGGCCACCCCGGTGCATCAAGATTCCAGTGACACTGATCGCCTTTTCAGC 378 Query 31689 GTGCTCGACCTTGAAGCTGATGGCGAACCCGTGGGCCTTCATGATCGGCTTCACCACGTC 31748 || || ||||||||| ||||||| |||||||| || |||||||||||||| || Sbjct 379 GTTTTCCACCTTGAAGGTGATGGCAAACCCGTGCTGCTGCATGATCGGCTTCAAGGTGTG 438 Query 31749 GCTGATGTCTTCAAGAGTTGCGTAACGGATGGTGCC---GTGACCCTT---GGCGCGCTC 31802 |||||| || || || ||||| ||| | | || ||| || ||| | || Sbjct 439 TGTGATGTGGTCGAGCGTGGCGTA--GGA-GTTTCCTGTGTGTAGGTTAACGGCACCTTC 495 Query 31803 TGCGATGGTTGGGATCTCGCACTGCATTTCGGCCATGGCGGCGTTGAACTGTTCTTGGGC 31862 | || ||||| | |||||||||||||||||| ||||| ||||| || | || Sbjct 496 GAACACAGTCGGGATGTTGCACTGCATTTCGGCCATTGCGGCATTGAAAGCTTGCTCAGC 555 Query 31863 --GCTGCGAGCCTGCATGCGCTCGTGCATCTGCATCAGGCGCTCGATCTTGTCGATATCG 31920 || || |||||||||||||||||| || ||||||||| ||||| ||||| ||| Sbjct 556 TTCCTTGGA--CTGCATGCGCTCGTGCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCG 613 Query 31921 ACGCTCGGGTCGCTGGCGGCCTTGCTGATGA 31951 | | || ||| ||| || |||||||| Sbjct 614 CAGGTTGGATCGGCGGCAGCACGGCTGATGA 644 >seq2286 Length=7100 Score = 86.0 bits (94), Expect = 2e-12 Identities = 201/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 30253 GCCCTCCCCATCTATCAGGTTGCGTCCACTTCACGCCGCACTCAGCGCCATACGCCGTG- 30311 |||||||||| | || ||||||||| ||| ||| ||||| | || ||| Sbjct 6200 GCCCTCCCCAGTTGTCCTTTTGCGTCCAGCGCACCTGATGCTCGGCGCCGAAGGC-GTGC 6142 Query 30312 ATCCATTCAATGAGACTGGCACATCGCTTCTTGCTCAGTTTGCTGGTCTGCGTGTAGAGG 30371 | |||||| || || | | || |||| | | || |||||||| || ||||| | Sbjct 6141 ACCCATTCGATCAGCTCGCCGCACTGCTTTACGGTGAGCTTGCTGGTGCGCTCGTAGATG 6082 Query 30372 ACATCGATTCCCTGACCGTCGATGGCCGGGATCATGTGCGGATTCTTGCCTTCCTCCCGT 30431 || |||| || | ||||| | || |||||||| ||||| || | ||| ||| || Sbjct 6081 ACGTCGAAACCGTTGCCGTCTACCGCAGGGATCATCTGCGGCTTGTCGCCCGACTCACGC 6022 Query 30432 AGCCACGCGGCTACACAG-AGGCGCTTCCAGACCGATGCCGACCATTTCTGCCCGGCGTG 30490 ||||| ||||| ||| ||||||||||||| | | ||| |||| ||||||||| Sbjct 6021 AGCCAGGCGGCCGT-CAGCAGGCGCTTCCAGATCAGGACATCCCACTTCTTCCCGGCGTG 5963 Query 30491 GTCCACTTGCTCGGCGAGATC--CTTGAGCATGGCGTGGAGCTTCTTGTTCTGCTC 30544 || || || |||||| ||| | |||| || || || |||||||||||| Sbjct 5962 CTCGACCTGGGCGGCGATATCGGCCAGAGC--CGCATGCAGGGCCTTGTTCTGCTC 5909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136437451428474