Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq40 556 4e-154 seq25858 116 1e-21 seq501 100 9e-17 seq62 86.0 2e-12 >seq40 Length=14228 Score = 556 bits (616), Expect = 4e-154 Identities = 534/682 (78%), Gaps = 2/682 (0%) Strand=Plus/Plus Query 11514 TCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTC 11573 ||| | |||||| || || || || ||||| || || || ||| |||||||||||| Sbjct 5051 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 5110 Query 11574 AATGAACTCTGGCACCGCTTCCGTGAAGTCTT-CCATGTACTTTTCATCACGCTCGACAA 11632 |||||||| |||||| || || || || ||||||| |||||||| ||||| || | Sbjct 5111 GATGAACTCCGGCACCATCTC-GTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 5169 Query 11633 CGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGT 11692 |||||| ||| || ||||| ||| ||||||| |||||||| || | |||||||||||| | Sbjct 5170 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 5229 Query 11693 CCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTT 11752 | || | || |||||||||||| |||||||||| |||||||| |||||||| ||||| | Sbjct 5230 CTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 5289 Query 11753 CAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCAA 11812 | || || ||||| |||||||||||||| || || || || || ||||| || || |||| Sbjct 5290 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 5349 Query 11813 GCCCGCGGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCATGGTTTCGTCCT 11872 | ||| ||| |||||||| | || || || ||||| || |||||||| ||||||| Sbjct 5350 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGC 5409 Query 11873 TGTAGATAATCGGCGACTCGGTTACCTGAACGCCGGCAGTAAATTCAAACAGGGCTCTTG 11932 ||||| ||||| || || || || | ||||||| |||||| |||||||||||||| | Sbjct 5410 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGG 5469 Query 11933 CGTCATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGC 11992 |||| | |||||| ||||| ||||| ||||| ||| | ||||||||||| ||||| || | Sbjct 5470 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACAC 5529 Query 11993 CGGTACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTT 12052 |||| || |||||||| || |||||||||||||| ||||| |||||||| ||||| || | Sbjct 5530 CGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 5589 Query 12053 TACCTGAGCGTGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAACTCCGAGGC 12112 | |||||||| || |||| ||| ||||| ||||| ||||| |||||||| || ||||| | Sbjct 5590 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 5649 Query 12113 GCAGCCTCTGCCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGCT 12172 | | | ||||| || ||||| ||||||||||| | ||| || ||||| || |||| Sbjct 5650 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 5709 Query 12173 CAAGGATGATTGCGGGAGTCAT 12194 ||||| || | || ||||| Sbjct 5710 GCAGGATAATGTCCGGTGTCAT 5731 Score = 111 bits (122), Expect = 5e-20 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 12419 AGGAATCCGAGCGCCTTAACGGCTTCGATTTGGGTAAGTTCAGAGGAATCGCGAATTTCG 12478 |||||||| || || || || |||||| || || ||||| || || ||||||| ||| Sbjct 5765 AGGAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCG 5824 Query 12479 CGACGGAATATTTTCGAACAAAGAGGCAGCAGGTCTTCATCCCATGTTTTATTCATGGCG 12538 || || ||||| | ||||| || |||| | ||| |||||||||||||||| || |||| Sbjct 5825 CGGCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCG 5884 Query 12539 ATGAGTACGTCGTTAATTTCTTTGATGGTGGCAATATCTGCCGGGGTGATATCGCGCTCA 12598 || || | |||||| || | ||||| || | |||| ||||| ||||| || Sbjct 5885 ATCAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCC 5944 Query 12599 GGCTGCCTTTCAGC 12612 ||||| | ||| || Sbjct 5945 GGCTGACGTTCTGC 5958 >seq25858 Length=775 Score = 116 bits (128), Expect = 1e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 29508 ACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGA 29567 ||||| | |||||||| || | ||| | | || |||||||| ||||| || ||| Sbjct 471 ACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATG 530 Query 29568 ATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCT 29627 ||||| || |||||| ||| |||||||| | ||||| |||||||| || |||||| Sbjct 531 ATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGCATTCATCATTACCCTGGCT 590 Query 29628 GCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTT 29687 || ||||| ||| || ||| ||| | || |||||||| || | ||||| |||||| Sbjct 591 GCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGCCTTGATCGAGCACGAGCTT 650 Query 29688 TATCACATCGCCCA 29701 |||||| | || || Sbjct 651 TATCACCTGGCTCA 664 >seq501 Length=12468 Score = 100 bits (110), Expect = 9e-17 Identities = 146/202 (72%), Gaps = 16/202 (8%) Strand=Plus/Minus Query 7484 CGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAA--ATCAAGAACTTATCCAC 7541 || ||||| |||||||| |||| | | ||| |||| ||||| ||||||| || Sbjct 11069 CGTAGGTCACAGGTTCGAATCCTGTAGGGCGTGCCATTTAATAATCAATCACTTATCAAC 11010 Query 7542 CATTCATTACCTC-CTG-TTTTTCCGTGTGGGACAAATTTGGGAC-------GCAA---T 7589 ||| | || ||| ||||||| ||||||||| ||||||||| |||| | Sbjct 11009 --TTCCTCCAGTCGCTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAAT 10952 Query 7590 CTCCAAAAATTGAGTCTATTTGCTTCGCGTGCTCGGTCAGGTGATTAGGTGCCAGATGTG 7649 | ||||||||||||| ||||| |||||||| || | || ||||||||||| || | Sbjct 10951 TTGCAAAAATTGAGTCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAG 10892 Query 7650 CATAACGGCGGACCATTTCTAT 7671 |||| || ||||||||||| || Sbjct 10891 CATATCGACGGACCATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7474 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAATTAAA 7525 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152182571963302