Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq7329 141 2e-29 seq19415 113 9e-21 seq614 102 2e-17 seq501 82.4 1e-11 >seq7329 Length=1002 Score = 141 bits (156), Expect = 2e-29 Identities = 244/347 (70%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 12853 CACGCAGGCTACATCCTGTATATGACCGACGCGGCGCAGA-GCAGCAGCGATATCGACCG 12911 || || || | ||| ||||| ||||||||||||||||||| | | || || |||||| Sbjct 6 CATGCCGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAG-GACATCGACTC 64 Query 12912 GATGCGCCAGGCGATGCGCGACACGAAAGGCCTGGGTAACTTCCGCAATCTGTTTATGTA 12971 ||||| || || || ||||||| | || ||||| ||||| |||||| |||| Sbjct 65 ACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTGTA 124 Query 12972 CGCGCCGAACGGCAAGCCGGACGGAATTAAGATCCTGCCGCTCAGCGAGGTGGCGACGAA 13031 ||||||| |||||| ||||| ||| || || | ||| | |||||||| ||| | || Sbjct 125 CGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAA 184 Query 13032 AGATGATTTCTTTAACATCAAAAAGGCCAGCCGTGACGACCTGCTGAGCGCGCACCGCGT 13091 || || ||| |||||||| |||||||||||| ||||| ||| ||| | Sbjct 185 GGACGAATTCAGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCAT 244 Query 13092 GCCGCCGCAAATGATGGGGATTATCCCGGACGGTGCAGGCGGCTTTGG--CGATTCGGTG 13149 || ||||| ||||||| || | ||| | || ||||| ||||| || | || | Sbjct 245 TCCACCGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCG--G 302 Query 13150 AAGGCGGCACAGGTGTTTGTCCG-CAATGAGCTGACGCCGTTGCAGG 13195 |||| || |||| || | | | ||| |||||| ||||||||||| Sbjct 303 GAGGCTGCTGAGGT-TTGGGCGGTCAACGAGCTGGAGCCGTTGCAGG 348 >seq19415 Length=1017 Score = 113 bits (124), Expect = 9e-21 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 11957 TACTCGCCGGAAGTGAAAACCGCGATGGTGCTGAAGGCAAAAGACACCATCAGCAGCGGA 12016 ||||| || ||||| |||||| ||||||||||||| | ||| ||||| | ||| Sbjct 887 TACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAAGGCTTACGACGTCATCAAAAACGGC 828 Query 12017 CGCCTGGAATACGATGCGGGCCAGACCGACATTACGCAGTCTTTTATGGCAATCCGCAAA 12076 | ||||| | |||||||||| ||| || || ||||||| || ||||| ||||||||| Sbjct 827 AGGCTGGAGTTCGATGCGGGCTGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAA 768 Query 12077 ACCATGACCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGACGCCAGC 12136 || || |||||| ||| | | ||| || ||| | |||| || || | || Sbjct 767 ACAATCACCGCCTCCGGGCGCATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGC 708 Query 12137 CACGCCGACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCT 12186 || |||||| | || ||||| | | ||||| |||| |||||||| || Sbjct 707 CATGCCGACCTAGCGTGGGCGCTGTTCCACGCGCTGCACAACGAACCCCT 658 >seq614 Length=6884 Score = 102 bits (112), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 20132 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATTTTAGCTGCTAA 20191 |||||||||||||||||| |||||||| ||| |||||||||||| ||||||| | || Sbjct 1838 CTCATAATCGCTTGGTCGTTGGTTCAAACCCAACAGGGGCCACCAAATTTTAGATTTAAA 1897 Query 20192 ATCAGCTACTTATAGCCACTCTTCGGAGTGGCTTTTTTGTT 20232 |||| || ||| |||||||| |||||||||||||||| Sbjct 1898 ATCACATAATTA-AGCCACTCGAAAGAGTGGCTTTTTTGTT 1937 >seq501 Length=12468 Score = 82.4 bits (90), Expect = 1e-11 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 20132 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGAT 20179 ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4812 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAAAT 4859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94451529644724