Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq3869 159 4e-34 seq2261 118 1e-21 seq2100 104 3e-17 >seq3869 Length=8584 Score = 159 bits (176), Expect = 4e-34 Identities = 291/425 (68%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | || || ||||| || || ||| | || || ||||| || || || |||||| | Sbjct 4772 AAAATCTCGCTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGC 4713 Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT--- 40564 || || | || || | || || || | ||| | ||||| ||||| Sbjct 4712 TCCTGCGTGCTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCC---ACCTCCAGC 4656 Query 40565 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGC 40624 ||||| ||||| || |||| || || || || || || | ||||| || | |||||| Sbjct 4655 GCGATTGTGAAATACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGC 4596 Query 40625 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGG 40684 || |||| ||||| || || ||||| | || || || ||||| |||| Sbjct 4595 GCGCTGGGCAGCCCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTAC 4536 Query 40685 AAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCA 40744 || ||| | || ||||| || |||||||| || ||||| ||||| || || || || ||| Sbjct 4535 AAGCATTTCCAGACCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCA 4476 Query 40745 ACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAAC 40804 || || | || || | |||||||||||||| |||| ||| |||||| |||| |||||| Sbjct 4475 ACCCTCTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAAC 4416 Query 40805 AAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTG 40864 || || | |||||||||||||| | || || || |||||| | ||| || || Sbjct 4415 CGTGGTACCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTG 4356 Query 40865 ATGTA 40869 ||||| Sbjct 4355 ATGTA 4351 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 42767 GTGAACGCTCTGGAAGCGATCCGTTTCTATGTGTCGTTTAGTTTCACCTTTAACTTTGCT 42826 || || || |||||||||||||| ||||| || || | | |||| |||||| Sbjct 2394 GTTAATGCCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCCTTCGCCTTTGCC 2335 Query 42827 GAACAAGGCAA---GATGGAAGGCAACGCGAAAATTATGCGCCTGATTGCGCGTGATGAA 42883 |||| |||| ||||||||||||||| |||||||| |||||||| || || |||||| Sbjct 2334 GAAC---GCAAACTGATGGAAGGCAACGCCAAAATTATCCGCCTGATCGCCCGCGATGAA 2278 Query 42884 GCATTGCATCAGAAAGGTACTCAG 42907 || |||| | || || || ||| Sbjct 2277 GCGCTGCACCTGACCGGCACCCAG 2254 >seq2261 Length=3986 Score = 118 bits (130), Expect = 1e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 |||||||| ||||| | ||||| ||||| || |||||||| || || || ||| | Sbjct 505 GAAGGTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGCGATG 564 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 ||| | || |||||||| || ||| | || |||||||| ||||| || || || |||||| Sbjct 565 GAAAACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACGTTTT 624 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTAC 51023 ||||| |||||| |||||||| | || ||||| || | ||||| || Sbjct 625 AACTCCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCAC 674 >seq2100 Length=19628 Score = 104 bits (114), Expect = 3e-17 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 39323 GACCAGATCGCAAAAGTCATTGAACAACTGAAATCAAC--CCCAGACGATCGCGGGATCA 39380 ||||||||| | || || | || |||||| ||| ||| ||| ||| |||||| Sbjct 19396 GACCAGATCAGCACGGTGATGAACCAGCTGAAA--AACGACCCGGACTCCCGCCGGATCA 19453 Query 39381 TCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 39440 |||| |||||||||||| | || || ||| | ||||| || ||||| ||| | Sbjct 19454 TCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCCT 19513 Query 39441 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 39500 |||| |||||| || | |||| || || || ||| |||||||||||| | Sbjct 19514 TCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGCG 19573 Query 39501 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATAT 39555 |||| ||| | || ||||||||||||||||| |||||| || ||| |||||| Sbjct 19574 ATGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557796718933160