Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2036 136 3e-26 seq19 107 1e-17 seq3381 105 4e-17 seq8653 89.7 3e-12 seq3382 87.8 1e-11 >seq2036 Length=5547 Score = 136 bits (150), Expect = 3e-26 Identities = 366/554 (66%), Gaps = 12/554 (2%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || || || |||||||| || || ||| ||||| | ||||||||||||| | || Sbjct 717 ATAGGAATCGATTTAGGTACAACATACTCGTGTGTCGGAGTTTGGCAAAATGATCGTGTC 658 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || ||||| ||||| || ||||| || || | || || || Sbjct 657 GAGATCATTGCCAACGATCAGGGTAACAGAACTACTCCATCGTACGTCGCCTTCACAGAC 598 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | ||| ||||||||||| || || | || | ||| || || || ||| Sbjct 597 ACTGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTTGCCATGAACCCAACCAACACT 538 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC---CAATCT 474568 | ||||| || || | ||||||||||| || || ||| | ||||| || || Sbjct 537 GTCTTTGACGCCAAGCGTTTGATTGGTCGCAAGTTCAGTGA---CTCTGTCGTGCAGTCG 481 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 |||||| || ||||| || ||||| || | | || ||| || ||| Sbjct 480 GATATGAAGCACTGGCCATTCAAGGTCATCTCCAAGGAAGACAAGCCACTCATCCAAGTC 421 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | | || | ||||| || || || || || || |||| ||| | ||||| | Sbjct 420 GAGTTCAAG--GGTGAGACCAAGACCTTCTCCCCAGAGGAAATCTCTGCCATGGTGCTCC 363 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATT 474745 ||| ||||| | || || | || || || |||||| || | || || || Sbjct 362 TCAAGATGAAGGAGACTGCCGAAGCCTACCTCGG-CAAGAACGTCGACAACGCCGTCATC 304 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 303 ACTGTCCCAGCCTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGATGCCGGTGTCATT 244 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || || ||||| || || || ||||| || ||||| |||| || ||| Sbjct 243 GCCAAGCTCAACGTCCAGCGTATCATCAACGAGCCAACTGCCGCCGCCATTGCCTACGGT 184 Query 474866 CTTGATAAGAATTC 474879 || || ||||| || Sbjct 183 CTCGAGAAGAAGTC 170 >seq19 Length=770976 Score = 107 bits (118), Expect = 1e-17 Identities = 263/395 (67%), Gaps = 24/395 (6%) Strand=Plus/Plus Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 || ||||||| |||||||| | ||||||| ||| ||||| | || | | | | || Sbjct 317019 AAGGTGTAAACCCTGATGAGGTTGTTGCAATTGGTGCTGCAATTCAGGGTGGTGTATTGA 317078 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 ||||| || | | || | || ||||| | |||| || || ||||||| Sbjct 317079 CAGGTGAAGTAAAAGA----CGTTTTATTATTGGA--TGTT------ACCCCGCTTTCAT 317126 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 ||||| |||| || | || || | ||||| || || ||||| ||||| |||| | Sbjct 317127 TAGGTATTGAGACCATGGGTGGTGTGATGACAAAACTGATTGAAGCCAATACAACTATTC 317186 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 | | |||||| || || || || ||| | |||| ||||| | | ||| |||| Sbjct 317187 CTTCTAAAAAAGCAGAAACTTTCTCTACTGCTGCTGACAATCAGCCTTCAGTAGAAATCC 317246 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAA---AGATAATAACAA-ACT--TGGAACTT 476078 | || || | || ||| | | ||| || | | ||| ||| |||| || Sbjct 317247 ATATTTTACAGGGAGAACG------CCCTATGGCAGCTCAAAACCGTACTATTGGACGTT 317300 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 ||| | | || |||||||| || || || | || |||||||||||||||||| | |||| Sbjct 317301 TTATTTTAGATGGTATTCCACCAGCACCTCGTGGTGTTCCTCAAATTGAAGTTGCATTTG 317360 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||||||||| || ||||| || |||| | |||| Sbjct 317361 ATATTGATGCCAACGGTATCCTGCATGTAAGTGCT 317395 Score = 105 bits (116), Expect = 4e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 474668 ATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA 474726 |||||| ||||| || | ||||||||| |||| || || | | | | || || || Sbjct 316286 ATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAGACTTTT-TAGGTCAGGA 316344 Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||||||||| || || || || ||||| || ||||| ||||| | |||||||| || || Sbjct 316345 AGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACGCACAACGTCAGGCTAC 316404 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||||| || || ||||||||| | | ||| | | || ||||| ||||| || || Sbjct 316405 AAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCATTAACGAACCTACTGC 316464 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAA 474873 ||| || | || |||||| | ||||| Sbjct 316465 AGCGGCTTTAGCCTATGGTTTGGATAA 316491 >seq3381 Length=12314 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 1114 ATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCCTT 1055 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| |||||| ||||| || || | | | ||||| || || Sbjct 1054 GTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGAGTGAT 995 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| || || || || Sbjct 994 CGTCTTGCCAGTGAGAGTCTTGACAAAGATCTG 962 >seq8653 Length=1535 Score = 89.7 bits (98), Expect = 3e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||||||||| || ||||| || | |||||||||||| || || || ||||| ||| Sbjct 266 TCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTG 325 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||| ||||| || ||||| |||| Sbjct 326 TCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAG 362 >seq3382 Length=4522 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 |||||||| ||||| || ||||| || || || || || ||||| ||||||||||| ||| Sbjct 4098 TGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATC 4039 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 || ||||| || || ||||| | | |||||||| || || || ||| Sbjct 4038 TTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTCTTTCCG 3979 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| ||||||||||| Sbjct 3978 GTCAGAGTCTTGACGAAAATTTG 3956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266968407012596