Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq3931 286 8e-73 seq8746 122 2e-23 >seq3931 Length=1953 Score = 286 bits (316), Expect = 8e-73 Identities = 558/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Plus Query 978 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1037 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 874 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 932 Query 1038 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1096 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 933 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 992 Query 1097 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1156 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 993 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 1052 Query 1157 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1215 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 1053 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 1111 Query 1216 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1275 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 1112 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 1171 Query 1276 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1335 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 1172 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 1225 Query 1336 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1392 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 1226 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 1270 Query 1393 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1452 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 1271 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 1330 Query 1453 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1512 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 1331 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 1390 Query 1513 AGCTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1572 | ||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 1391 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 1450 Query 1573 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1632 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 1451 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 1510 Query 1633 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1692 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 1511 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 1570 Query 1693 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1752 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 1571 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 1630 Query 1753 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1786 | ||||| ||| || || || || |||| ||| Sbjct 1631 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 1664 Score = 134 bits (148), Expect = 3e-27 Identities = 214/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 294 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 353 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 172 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 231 Query 354 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 413 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 232 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 291 Query 414 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 473 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 292 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 351 Query 474 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 531 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 352 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 409 Query 532 CAGGAGCCGTGACCAGCGCTCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 591 |||| |||||| || || || | ||||| |||| ||| | || ||||| ||||| Sbjct 410 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 469 Query 592 TC 593 || Sbjct 470 TC 471 >seq8746 Length=2069 Score = 122 bits (134), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8279 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8336 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 1773 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 1715 Query 8337 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACG 8396 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 1714 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 1655 Query 8397 GACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8449 | ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 1654 CAGCGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 80.6 bits (88), Expect = 6e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8696 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8755 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1373 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1314 Query 8756 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8815 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 1313 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1254 Query 8816 CTGGTCGAACTCCAGCGCTTGGGCTGG 8842 |||| ||| | |||||||||||| Sbjct 1253 CTGGCCGAGTTTGCCCGCTTGGGCTGG 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116412166067234