Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq3931 336 5e-88 seq17194 149 1e-31 seq8746 104 6e-18 >seq3931 Length=1953 Score = 336 bits (372), Expect = 5e-88 Identities = 1092/1669 (65%), Gaps = 85/1669 (5%) Strand=Plus/Plus Query 189 ATCCAATAGCTGGCCCAAACCACGCGCCCGACAATATCCAGGTCTTGCAACTGCTCTTTG 248 |||||| || ||||| || ||||| || | || |||||||| | ||||| || || Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 249 GGCACAGTCATTTCTGTGTACGCCCGATTCTCGCTTATGATCGCAATCGATCCGTCAAAC 308 || ||| ||| || ||| ||| ||||| || ||||| ||| || ||||| ||| Sbjct 116 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 175 Query 309 CTACGCTGTAGGCGCTTGGCATACAGGTGATCCTGGAGCCGGATGACGTAAACAGCCTCG 368 ||||| || | || ||||| || || || | |||||||||||||| |||||||| Sbjct 176 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 234 Query 369 TCCCGTACCTCTCGATACGA--GTGGTCAACCAGGACGGTATCCCCATCGGACAACAACG 426 |||| | | | | || |||||||| || || ||||| |||||| | | Sbjct 235 TCCCTCAAG-CGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTC 293 Query 427 GCTCCATTGAGTCGCCGCCAACGCGGACAGCTGAGAGGTTAGCGGTGTCGAGCCCCTTCT 486 |||||| || || ||| | || |||| || || || || | ||| || || | || Sbjct 294 CCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCT 353 Query 487 TTCTCAGGCTGTACCTGGTAAACGCCAGCTTCGTCAGTTCTCGGGCTCCCTCTGTCCAGG 546 | | || |||| ||| ||||| |||| || || | || || || |||||| Sbjct 354 TGCGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGG 413 Query 547 AGCCATGTCCCGCGCTTACTTTCGTGTCATACAACGGGATGTAGGCATAGTCGGGGGCTC 606 ||| |||||||| || | | ||| ||||| || | ||| || || | | ||| Sbjct 414 CGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC--CTC 471 Query 607 C-CGCTGGGCT----AGCGGCCTCTGGCGACTCGCCCCCCGTACTCCCCGATGCACTCTG 661 | | ||| || ||| || | | ||| | ||||| || || || | Sbjct 472 CGCAATGGACTGGGAAGCAGCTCCCTTCAACTTGTCCCCC----TCGCC--TGAA----- 520 Query 662 TTTGCCGGCGATCAACCAATCCAAGGATACGCCTGCCGCCTCCGCTATAGCCGCACAGCG 721 || || || ||||| | ||||| |||||| || || | |||| || Sbjct 521 ---GCAAGC---CAGCCAAT----GTCGACGCCGACCGCCTTAGCGATGTCTACACACCG 570 Query 722 GGATGCCTTTGGCTCGCTATCACCTGTGAGGTAAGCCTCCAAGGTGCTTCGGGGGATAGC 781 | | |||| ||||| || | || || |||||| ||| | ||||| ||| |||||||| Sbjct 571 CGCTACCTTGGGCTCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGC 630 Query 782 CGTTTTCCGGGCGAGGCTATCACCGTTTCCGACTATGTTTGCGCACTCACGAATGCGGGC 841 || || || | ||| || |||| |||| | ||||| | || || || | Sbjct 631 GGTAAGTCGCGCCAACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTC 690 Query 842 CGCAAGGCTGTCTGTCATTTCGCTTTCTCACCTGAGGAATACGAAAC-------CTGGAC 894 ||| || | || ||||||||||||||| | |||| || |||||| ||| || Sbjct 691 CGCCAGCCCTTCGCTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCAC 750 Query 895 GAAACTAGGTTTCTGATTTCGTATTCCGaaaaaaaCCATACAAATCAACGATATGGTCAA 954 || | | |||| | |||| ||| ||| || |||| ||||| || || | ||| Sbjct 751 AAAGCGAAATTTC-GCTTTCT-----CGATAAAG-CCTTACAGATCAAAGAGATAGACAA 803 Query 955 TTTCAGAACCTCGA--ATGCCGAAATTCAGCAAACGAAATTCCGTTTT-CGGTTGAT--- 1008 ||| ||| | | | ||| || | | || ||||| || |||| || || | Sbjct 804 AATCA--ACCACCATCAAGCCAAAGATG-GAAAGCGAAAAGCCATTTTTCGCTTTACCAC 860 Query 1009 -TGGTCTTCCGAAAACGACTATGTTTATGCCCTAAGTCACGTTAGACAACCCAAGTAGTC 1067 | || | | | |||||||||||||||| || |||||||||| ||||| | | Sbjct 861 ATAGTTAT----ATTTGGCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAACC 916 Query 1068 GCCCTGCATGGCGGCTGA-AATGGAACGTAGGCATGAACAGAACCGAAATCCCACGCGAC 1126 |||| || || | |||||| |||||||||||| |||||||||||| | ||| Sbjct 917 ACCCTTGCCGGTGGTTATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGAC 976 Query 1127 AACAACGTCCGCTGGGAGTGGATCAAATACCAACTCCGCGCCAGGGGATCGTCCCTGGCC 1186 | | | || ||||| ||||||||||||||||| || || | || |||| || || Sbjct 977 CCAACCCTGCGATGGGAATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCA 1036 Query 1187 GAGGTGGCCCGCTCCCTCGACGTCTCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCC 1245 |||| || || ||||| | ||| | || ||||| ||||| |||| | | | Sbjct 1037 ATCTTGGCGCGTGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGC 1095 Query 1246 CTACCCTCGGGTAGAGCGCGCCATCGCTGCCGTGCTCGA--CCTCAGCCCCCTGGTGCTG 1303 || || || | ||||| || || || |||||| | | ||||| || | | || Sbjct 1096 ATATCCGCGAATGGAGCGAGCTATTGC--CCGTGCGCTAGGCCTCAAGCCAATCGACTTG 1153 Query 1304 TGGCCTGAGCGCTGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCGAATCGTTCGGAA 1363 ||||| || || ||| || ||| | || | || ||| | | || | ||| Sbjct 1154 TGGCCCGAACGTTGGAACGCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA 1213 Query 1364 ACCCTCAAGGCATATGACAGTGTCATATGCCGATCCGGGAAAAATACCAGATACGCTGAC 1423 | ||| ||| | || || ||| | | | | || |||| | || | Sbjct 1214 ---CACAACGCAACT-------TC-TA-GCCAA---GAGCATAAC-CCAGCTTA--TGCC 1255 Query 1424 CAAGCGCAGCGTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCA 1483 | || |||||| ||| | ||| || | |||||| ||| || || || || | Sbjct 1256 CTTCGACACCGTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTA 1315 Query 1484 CCCTGGACATCTTCGATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACG 1543 | | ||||||||| ||| || ||||||| || ||||| || || | ||||| | | Sbjct 1316 CGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATG 1375 Query 1544 CCGCCCAGGTCAGCGAGCTGGTCAGCGAAATTCTGAAGGCTTGCGACCTTGACCGTTACG 1603 |||| |||||||| || ||| ||||||| |||||||| | || ||| || |||||||||| Sbjct 1376 CCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACG 1435 Query 1604 AGGTCGCCGCCCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACG 1663 | | | || |||||||| ||| | ||||||||||||||||| ||| ||||||| |||| Sbjct 1436 AAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACG 1495 Query 1664 CCTGGTCGAGTCCCGCCCGAGCTGATCACAACCTGCCTTTCTACCGCGCCGCCCTCCTGG 1723 | |||||||| || |||||| | || || |||||||| ||||| | ||| | || || | Sbjct 1496 CGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTG 1555 Query 1724 AGGACGTCTGCGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCG 1783 | || || || || ||| | | ||| |||||||||| || || || ||||||| Sbjct 1556 AAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCG 1615 Query 1784 TGGCCTATGGCCGAGACGCACTGCTCGCCGAGCTGGGCCGCTTGGAGCG 1832 |||| || || || || ||||| ||| ||||| || || ||| ||| Sbjct 1616 TGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 1664 >seq17194 Length=1719 Score = 149 bits (164), Expect = 1e-31 Identities = 210/293 (72%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 8553 ATGGAACCCAACAAAGCCCTGGAAAAAATCAAGAAACTGCTTCGCCTAGCAGGCAGCAGC 8612 ||||| | | ||||||||| || ||||||||||| ||||| ||||| |||| ||| Sbjct 292 ATGGACCAGAGCAAAGCCCTAGACAAAATCAAGAAGCTGCTGCGCCTGGCAGCTAGCGAT 233 Query 8613 AACCCACACGAAGCGGCGGCCGCCATGCGCCAGGCGCGGGCGATGATGGAGAAACACGGC 8672 ||||| |||||||| || || ||||||| |||||| || || ||||||| || || || Sbjct 232 AACCCGCACGAAGCTGCCGCAGCCATGCACCAGGCCCGCGCCTTGATGGAAAAGTACCGC 173 Query 8673 ATTGGCGAGAGCGATATT--GCTCTGGCTGACGTCACCGAACACGGCACCGGTAGCGGCT 8730 ||| ||| |||||| ||||| | || || |||| || | || ||||||| | Sbjct 172 CTTGAAGAGTCGGATATTCAGCTCT--CCGAGGTATTCGAATGCGCCGCCCGTAGCGGTT 115 Query 8731 CCAAACTGAAGCCCGCGCAGTGGGAAGCTAATCTCGGCGGCACCGTCGCGAAGGCATACT 8790 | || ||| || |||| |||||||| || || | || | ||| | |||| ||| Sbjct 114 CAAAGATGACCCCGCCGCAATGGGAAGCCAACCTGGTGGGTGCAGTCACCCAGGCCTACG 55 Query 8791 CCTGCAAGCTGTTCTTCGCGGCTGGCATCGGCCAATGGCGCTTCGTGGGCGAA 8843 ||||||| | | ||| ||| || |||||| ||||||| || | |||||| Sbjct 54 CCTGCAAAGTCCTGTTCATGGCGGGTATCGGCGAATGGCGTTTTATCGGCGAA 2 Score = 84.2 bits (92), Expect = 5e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 8472 CACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8531 |||| ||||||||||||| || | ||||| |||||||| | |||||| | | ||||| Sbjct 628 CACTAAGCGAAACCGCCCTGGTCAT-CCGGGGTGGTCTGCCAGGCGTGGTTGCCTGGTAC 570 Query 8532 TGACGAGCAGCCGAGGAATACATGGA 8557 |||||||||||||||||| | ||||| Sbjct 569 TGACGAGCAGCCGAGGAACAAATGGA 544 >seq8746 Length=2069 Score = 104 bits (114), Expect = 6e-18 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 8900 CCGCCGCGACTACATCGCCACCGAGCTTAAGCGCTGCAAGGCCTCCACCAAAACCAAGCG 8959 |||||| |||| ||| | || || | |||||||||||| | | ||||| |||||||| Sbjct 2069 CCGCCGTGACTTCATTGGAACGCAGTTGAAGCGCTGCAAGCCTGCTACCAAGACCAAGCG 2010 Query 8960 TGGCGACCTGTTCTGCGACGCCTGGGTGTGGTCGGTGCGTAAGCAGGTCAATCAGTTCGC 9019 || |||| ||||||| | ||||||||||| | ||||| ||||||| ||| || Sbjct 2009 TGCCGACGTGTTCTGTGGCGCCTGGGTGTCAGCAGTGCGCCGACAGGTCATGGCGTTTGC 1950 Query 9020 CGGGAGTGCGCAGCCGTCGCTGGCAGCCGAGGCGTACATGGTGAAGCACCACCCCGA 9076 || | | |||| || | |||| | | |||||||||| | |||||||| |||| Sbjct 1949 TGGCAACGATGAGCCTTCACCGGCAACAGCGGCGTACATGCTTAAGCACCATTCCGA 1893 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 9556 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9615 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1373 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1314 Query 9616 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACCTAGGGCCGCGCCAGATCGACCACGTA 9675 | ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||| Sbjct 1313 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1254 Query 9676 CTTGTCGAACTCCAGCGCCTGGGCTGG 9702 || | ||| | ||| |||||||| Sbjct 1253 CTGGCCGAGTTTGCCCGCTTGGGCTGG 1227 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 8477 AGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTACTGACG 8536 ||||||| ||||||||| | | ||| |||||||||||||||||| |||||||||||| | Sbjct 1745 AGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTACTGATG 1687 Query 8537 AGCAGCC 8543 ||||||| Sbjct 1686 AGCAGCC 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118542651698318