Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq12700 138 3e-28 seq4750 98.7 2e-16 seq11225 95.1 3e-15 seq360 93.3 1e-14 >seq12700 Length=2524 Score = 138 bits (152), Expect = 3e-28 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 25846 CTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCAA 25905 ||||||||| ||||| | || || |||||||| ||| || ||||| | |||||| | Sbjct 395 CTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAAC 336 Query 25906 CTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGCTT 25965 ||| ||| | | | ||||||||||| || ||||| || ||| ||| || || ||||| Sbjct 335 CTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTT 276 Query 25966 GTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTAGGCAT 26025 ||| | |||| || ||||| || | || | || | ||||||| ||||||| |||| Sbjct 275 GTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTCGGCAA 216 Query 26026 ATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTCCGCG 26085 || | |||||| || |||||||| | | ||||| | || || ||||||| || || Sbjct 215 GTAGCGAACTTCGGGATCCTGGCCGCATGTACCGACCAATATGACTTTGTTAACCCCACG 156 Query 26086 TGCCAT 26091 ||||| Sbjct 155 GGCCAT 150 >seq4750 Length=4641 Score = 98.7 bits (108), Expect = 2e-16 Identities = 180/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| || || | | ||| ||||| ||||| | || || ||||| || ||||| Sbjct 4240 CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTC 4181 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 || || | || || | ||||| | || |||||||||||| || || ||||| || Sbjct 4180 ACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGAC 4121 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 ||| || || |||||||| | |||||||||| || |||| ||| | ||| | || Sbjct 4120 TTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTAC 4061 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 || ||||||| || | || | | ||| || || || || || |||| || | ||| Sbjct 4060 TGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGAT 4001 Query 26068 TACCTTGTTAATTCCGCGTGCCAT 26091 || || || | ||||| ||||| Sbjct 4000 CACTTTATTTACGCCGCGAGCCAT 3977 >seq11225 Length=5908 Score = 95.1 bits (104), Expect = 3e-15 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| ||| ||||| | ||||||| | ||| || ||||| || ||||| Sbjct 5058 CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTC 5117 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 || || | || || | ||| ||| | ||||| || ||||||||||| || || Sbjct 5118 ACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTG 5177 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | |||| || |||||||| ||||| | || |||||||| | | ||| || | || Sbjct 5178 CTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTAC 5237 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 |||| | ||||| || | || | ||||||||||| ||| ||||||||| | || Sbjct 5238 GGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAAT 5297 Query 26068 TACCTTGTTAATTCCGCGTGCCATTGCGCTCCTCC 26102 || ||||| | || |||||||| | | | |||| Sbjct 5298 CACTTTGTTGACGCCTCGTGCCATGGTGTTGCTCC 5332 >seq360 Length=29890 Score = 93.3 bits (102), Expect = 1e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||||||| || |||| || |||||||||||| | || |||||||| || ||||| Sbjct 27317 CCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGAGAGCCTTTACGCAGATACTC 27376 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 || || || || |||| || ||| | | |||||| ||||||||||| || | ||| Sbjct 27377 ACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGGTGCCACTCGGTCTGCTCTTT 27436 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | | || ||||||||||| | || || || | | || || || || Sbjct 27437 CATTTCGCCGGTCTGCTTGTCACGCCAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGAC 27496 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 ||| || | ||||| || | |||||||||||||| || | || ||||| | || Sbjct 27497 AGCGCCGCCACTTGGCATGTAGCGTACTTCCGGGTCCTGCCCCAGATTACCGACGAGAAT 27556 Query 26068 TACCTTGTT 26076 |||||||| Sbjct 27557 CACCTTGTT 27565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123619349440856