Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq48 192 8e-44 seq103 95.1 2e-14 seq102 93.3 6e-14 >seq48 Length=607718 Score = 192 bits (212), Expect = 8e-44 Identities = 527/798 (66%), Gaps = 36/798 (5%) Strand=Plus/Minus Query 47755 TCCTCAACAAACTGACGGACAGAATATTGAT--TTCCTGTGGCAATAACAAAATCATCAG 47812 |||||| |||| | |||||||| || || | | ||||| ||||| ||||| || || | Sbjct 249351 TCCTCA-CAAAATCACGGACAG--TAGTGGTAATCCCTGTTGCAATCACAAAGTCTTCTG 249295 Query 47813 GTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGT 47872 || ||| || ||||| || |||||||| || |||| ||||||| | ||||||||||||| Sbjct 249294 CTTTTTCCTGCTGAAGGATCAACCACATGGCTTCGATATAATCTTTAGCATGTCCCCAGT 249235 Query 47873 CACGAAGTGC--ATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGC 47930 |||| | || || ||| || |||| ||||||||| | || || | ||| Sbjct 249234 CACGCTGCGCTGAT-AAG-TTACCTAAATATAAACAATTCTGAAGTCCCAAGGCAATTTT 249177 Query 47931 TTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATG 47990 | ||| | ||||| || || || ||||||||||| || | | || |||||| Sbjct 249176 CGCTGCTGCACGGGTAATTTTTCGGGTCACAAAAGTTTCTCCTCTTAAAGGGCTTTCATG 249117 Query 47991 ATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACT 48048 ||| || | ||| ||| |||| || ||||| || | ||||||||| || | || Sbjct 249116 ATTGAATAAAATCCCATTACAAGCGTACATGTTATAAGCTTCACGATAATTTACCGTA-- 249059 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| |||| | ||| || || |||||||||| | ||||| || || || || Sbjct 249058 ATCCAGTAGGCATACATTTTGGCCACTGCATAAGGAGACCTGGGATAAAACGGCGTCGTT 248999 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | || ||| | | |||||| |||||| | |||| || || || ||||| || Sbjct 248998 TCACTTTGGGGAACCGCCTGCACCAAACCATACAATTCAGAAGTAGAGGCCTGATATATT 248939 Query 48169 CGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | | ||||| | | | || | || || || | || | || || || Sbjct 248938 CTGGTTTTTTTCTCCATACCCAAAATCCGTATGGCTTCCAGGAGCCTTAATGTCCCGATA 248879 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | | ||||| || ||||| || || || | ||||| ||| || Sbjct 248878 CCATCCGCATTCGCCGTATATTCCGGCATTTCGAAACTCACATGAACATGGCTCATGGCT 248819 Query 48289 CCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAG 48348 | || |||||||| || ||||| || | || |||| | | ||| || ||||| Sbjct 248818 GCCAGGTTATAAATTTCGTCTGGCTGGGTTTCTTGTATAATGCGGATTAAGTTGGTAGAA 248759 Query 48349 TCTGTTAAGTCTCCATAATGCA----------------ATTTTAAT--TGATC---ATAA 48387 || || | || ||| |||||| ||||| || || || ||| Sbjct 248758 TCGGTCAGATCCCCAAAATGCAGTTTAAAATTCACGCCATTTTCATGCTGGTCCTGATAC 248699 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 | |||||||| | || |||||||| ||||||| || | | |||||||| | Sbjct 248698 AAATGATCAATACGATCTGTATTAAACAAAGAAGATCGTCTTTTTAGTCCATGAACAAAA 248639 Query 48448 TA-CCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGT 48506 || || ||||||| ||||| |||||| | || | |||||| || || || | || || Sbjct 248638 TATCCTTTTTTCAATAAGAA-TTCTGCAAGATAGGCACCATCCTGACCCGTTACCCCTGT 248580 Query 48507 GATTAAAGCAACTTTCAT 48524 ||||||||| || ||||| Sbjct 248579 GATTAAAGCTACCTTCAT 248562 >seq103 Length=5517 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| |||| | ||||| |||||||||||| ||| | Sbjct 2175 TGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 2116 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 2115 TGAGCTAATCCCCC 2102 >seq102 Length=326246 Score = 93.3 bits (102), Expect = 6e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 |||||| ||||| ||||||||| ||||| ||||| |||||| ||| ||||||||||||| Sbjct 107298 GCGGAGGGGGTGGGATTCGAACCCACGGTAGGCTCTCACCTACGCCGGTTTTCAAGACCG 107239 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| ||||| |||| Sbjct 107238 GTGCCTTAAACCGCTCGGCCACCCCTCC 107211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665259588619640