Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq26023 320 5e-83 seq10590 163 9e-36 seq25528 123 8e-24 seq18063 109 2e-19 seq85 93.3 1e-14 >seq26023 Length=543 Score = 320 bits (354), Expect = 5e-83 Identities = 396/538 (74%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 39996 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG 40055 ||||||||||||||||||||||| |||||||||||||| | ||| || || | |||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 40056 CTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACC-CAC-ACCGGGA 40113 |||||||||||||||||||| || ||||||||| |||| | || | ||| | Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGC--TCGCGGCGCATGATCGGAA 419 Query 40114 TGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCC 40173 || ||||| || || ||| ||||||||||| ||||| |||||||| ||| ||| | Sbjct 418 TGATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGC 359 Query 40174 GGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGC 40233 | || ||||||||||| |||||| ||||| |||| ||| || || || || | Sbjct 358 GCTTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCT 299 Query 40234 CGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCC 40293 || | | || || |||| || |||| ||||| ||||| | | || ||| || | Sbjct 298 CGATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGC 239 Query 40294 CGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGC 40353 ||||||||||||| |||||||||||| | ||| ||||||||| || ||| | Sbjct 238 CGTCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCC 179 Query 40354 CGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGA 40413 | | ||| || | | ||||| || | |||||||||| ||| | | ||||| Sbjct 178 CCATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGA 119 Query 40414 TCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACT 40473 || ||||||||| ||||||||||||| |||| ||||||||| |||||||| | Sbjct 118 TCGTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGT 59 Query 40474 GGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACAC 40531 ||| |||||||| || ||||||||||||||||||| ||||| ||||||||||| || Sbjct 58 CGATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq10590 Length=4137 Score = 163 bits (180), Expect = 9e-36 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 2622 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2563 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || |||||||||||| || ||||||||| || ||||||| ||||||||||| Sbjct 2562 CAGGTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACC 2503 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || ||||| ||| |||||||| ||||||| ||| |||| || Sbjct 2502 GGCGCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAA 2443 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 40726 ||| || | |||||||| |||||| ||||||||| |||| Sbjct 2442 CTCCATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 Score = 118 bits (130), Expect = 3e-22 Identities = 228/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 3758 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 3699 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 3698 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 3639 Query 39471 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39523 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 3638 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 3586 Query 39524 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39583 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 3585 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 3526 Query 39584 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTC 39643 || ||| || |||||||| || |||||||||||||| |||| || | |||||| || Sbjct 3525 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 3466 Query 39644 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39676 || || | ||||| | ||||||| |||| Sbjct 3465 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 3433 >seq25528 Length=831 Score = 123 bits (136), Expect = 8e-24 Identities = 421/645 (65%), Gaps = 22/645 (3%) Strand=Plus/Minus Query 40967 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41026 ||||||||| || | ||| | |||||||||| ||| ||||| ||| |||| |||| Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 41027 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41086 || | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 517 Query 41087 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 41145 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 516 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 457 Query 41146 GGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCA 41205 || ||||| || || ||||||||| | ||||||||||||| ||| | Sbjct 456 GGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGA 397 Query 41206 GGTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGT 41265 |||| ||| || | | ||| | | ||| | |||||| | || |||||| Sbjct 396 AGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGT 337 Query 41266 ACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGA 41325 |||| || || ||| | ||| || ||||| ||||| || ||||| |||| | Sbjct 336 ACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGATCA 277 Query 41326 TGCCCTCGCTGCAC-TCGGCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCAGC 41384 || | | | || || | || || ||| | ||| | |||| | || Sbjct 276 GTCCTTTGGAATAGGTCTGCAGC-AGCTCGCGGTCCATGCGCGG---CTTGA--AGTAGT 223 Query 41385 --CCCTCCTGGTAGGAGCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCT 41442 |||||| | || || || ||| || | |||||||| | |||| || ||| Sbjct 222 AACCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTCT 163 Query 41443 G-CGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGACACGTCGTAACGCTTCTGC 41501 | | | | |||||||||||| |||||||||||| |||||| ||||||| | |||||| Sbjct 162 GACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTGA 104 Query 41502 TCGGGCGACCCCCACTTGACCCG------GTCAAGGCTTCGCCTGTCGCCGGGGGCGACG 41555 |||||||| ||||||| || || |||| || || | |||||| | ||| Sbjct 103 TCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGT---GCCGGGAGTGACA 47 Query 41556 TAGGCTTCCATTCCCACGATGGGCTTGATGCCCGCTGCGGTGGCC 41600 ||||| || | || | ||| ||||||| ||||| || ||||| Sbjct 46 TAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCC 2 >seq18063 Length=485 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40572 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40631 |||||||||||||||||||||||| | || ||||| |||||||| ||||| | || Sbjct 26 TCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCCGAT 85 Query 40632 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40691 || || || ||||| || |||||||| || ||||| |||| |||||| ||| Sbjct 86 CCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATTACG 145 Query 40692 ACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 | |||||||| ||||| ||||||||||| || || || | |||| Sbjct 146 ATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 193 >seq85 Length=367292 Score = 93.3 bits (102), Expect = 1e-14 Identities = 189/279 (68%), Gaps = 24/279 (9%) Strand=Plus/Plus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||| ||||| || ||||| ||||| ||||| | || || || || |||| ||| Sbjct 8430 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 8489 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| |||||||||||||||| | || || Sbjct 8490 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 8537 Query 39679 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39736 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 8538 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 8595 Query 39737 CTTACGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39795 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 8596 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 8648 Query 39796 CGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCA 39834 | || | || ||||||||||| ||| ||||||| Sbjct 8649 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 8687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163829866532036