Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq26023 322 2e-83 seq10590 163 9e-36 seq25528 147 7e-31 seq18063 109 2e-19 >seq26023 Length=543 Score = 322 bits (356), Expect = 2e-83 Identities = 393/536 (73%), Gaps = 0/536 (0%) Strand=Plus/Minus Query 40284 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG 40343 ||||||||||||||||||||||| |||||||||||||| | ||| || || | |||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 40344 CTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATG 40403 |||||||||||||||||||| || ||||||||| || | | ||| ||| Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGCTCGCGGCGCATGATCGGAATG 417 Query 40404 TGGTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGG 40463 ||||| ||||| ||| ||||||||||| ||||| |||||||| ||| ||| || Sbjct 416 ATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGC 357 Query 40464 ACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCG 40523 || ||||||||||| |||||| ||||| |||| ||| || || || || | || Sbjct 356 TTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCG 297 Query 40524 TAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCG 40583 | | || || |||| || |||| ||||| ||||| | | || ||| || ||| Sbjct 296 ATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCG 237 Query 40584 TCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 40643 ||||||||||| |||||||||||| | ||| ||||||||| || ||| || Sbjct 236 TCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCCCC 177 Query 40644 ACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATC 40703 | ||| || | | ||||| || | |||||||||| ||| | | ||||||| Sbjct 176 ATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGATC 117 Query 40704 CGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGG 40763 ||||||||| ||||||||||||| |||| ||||||||| |||||||| | | Sbjct 116 GTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGTCG 57 Query 40764 ATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACAC 40819 || |||||||| || ||||||||||||||||||| ||||| ||||||||||| || Sbjct 56 ATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq10590 Length=4137 Score = 163 bits (180), Expect = 9e-36 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 2622 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2563 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || |||||||||||| || ||||||||| || ||||||| ||||||||||| Sbjct 2562 CAGGTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACC 2503 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || ||||| ||| |||||||| ||||||| ||| |||| || Sbjct 2502 GGCGCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAA 2443 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 41014 ||| || | |||||||| |||||| ||||||||| |||| Sbjct 2442 CTCCATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 Score = 113 bits (124), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 ||||||||| || || |||||||| | |||||||||||| || |||| | | || Sbjct 3758 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 3699 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 || || || || ||||| | ||||||||| |||| || |||||| ||| || ||| Sbjct 3698 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 3639 Query 39759 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39811 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 3638 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 3586 Query 39812 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39871 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 3585 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 3526 Query 39872 CAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTC 39931 || ||| || |||||||| || |||||||||||||| |||| || | ||| || || Sbjct 3525 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 3466 Query 39932 CTGGTAGATGATGAGCTGGAAGGTCGGGTCCAG 39964 || || | ||||| | ||||||| |||| Sbjct 3465 TTGATACAGGATGATGCCGTAGGTCGGTGCCAG 3433 >seq25528 Length=831 Score = 147 bits (162), Expect = 7e-31 Identities = 431/647 (67%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 41255 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41314 ||||||||| || | ||| | |||||||||| ||| ||||| ||| |||| |||| Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 41315 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41374 || | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 517 Query 41375 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 41433 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 516 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 457 Query 41434 GGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGA 41493 || ||||| || || ||||||||| | ||||||||||| | ||| || Sbjct 456 GGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGA 397 Query 41494 AGTACCGGTCACGCCCGAAGACCTCCAGGTAC-CGAC--CGGCCTCCTTCACGGCCTCGT 41550 |||| || ||||| | ||| || || || | ||||| | | | || || Sbjct 396 AGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGC---GT 340 Query 41551 CGTACTGCCCGAGGTTCAGCCGGGTCATGATCGCACCGCCAGGACATCCGGTCGTGACGA 41610 ||||||| ||||| ||| || ||| |||| | || || |||||||| || ||| Sbjct 339 CGTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGA 280 Query 41611 CCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AG 41668 ||| || | | | | || || | ||| ||| |||||||||||| ||| | || Sbjct 279 TCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAG 224 Query 41669 CAGGCCCTCCTGGTACGACCGCGAGCTGAGCTTCATGAGGTTGTGCAGGCC---GGTCTT 41725 | |||||| | |||||| ||||||||| | |||||||||| ||| ||| | Sbjct 223 TAA-CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCT 165 Query 41726 GTTCGTGGAGAGGATCGTGAGGTGCGTGTACGCACCCCGACCGCTCACGTCGTACCGCTT 41785 | | | | | || || || ||||||||||| ||| ||||||| | ||| Sbjct 164 CTGACTCCACATGGTCATGTGG---GTGTACGCACCGGAACCCGAGACGTCGTCGCTCTT 108 Query 41786 CTGGTCTTCCGTGCCCCACTGGACTCGCTCCTGGTCGAAGCGG-GAGT-CCGGG-GCCAT 41842 ||| || || ||||||||| || ||| || ||| |||| | || ||||| | | Sbjct 107 CTGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGAC 48 Query 41843 GTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGCGCCG 41889 || ||||||| ||||||||||||||||| || ||||| | |||| Sbjct 47 ATAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCG 1 >seq18063 Length=485 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40860 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40919 |||||||||||||||||||||||| | || ||||| |||||||| ||||| | || Sbjct 26 TCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCCGAT 85 Query 40920 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40979 || || || ||||| || |||||||| || ||||| |||| |||||| ||| Sbjct 86 CCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATTACG 145 Query 40980 ACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 | |||||||| ||||| ||||||||||| || || || | |||| Sbjct 146 ATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164789544744236