Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq177 201 6e-47 seq47 190 1e-43 seq11306 178 6e-40 seq19644 136 2e-27 >seq177 Length=203703 Score = 201 bits (222), Expect = 6e-47 Identities = 405/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66729 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66788 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66789 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66848 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66849 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66908 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66909 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66968 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66969 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 67026 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 67027 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGC 67086 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 67087 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 67146 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 104023 Query 67147 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTT 67206 || |||||||||| ||| | ||| || ||| ||||| ||||||||||| || Sbjct 104024 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 104080 Query 67207 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 67266 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 104081 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 104140 Query 67267 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 67324 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 104141 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 104198 >seq47 Length=21181 Score = 190 bits (210), Expect = 1e-43 Identities = 447/666 (67%), Gaps = 19/666 (3%) Strand=Plus/Plus Query 66668 TGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTA 66727 |||||| ||| |||||||||| | ||||||| ||| |||||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 66728 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66787 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66788 TCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGA 66847 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66848 GCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTG 66905 || | ||||| |||| || || | || || || || || |||||||||| || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG 15820 Query 66906 GTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66964 || | |||||||||||| ||||||||||| ||||||||| |||| || | || Sbjct 15821 -TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTC 15879 Query 66965 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 67024 ||| | | | | ||||||| ||||| || ||||| || |||| || || | Sbjct 15880 TGGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAAT 15939 Query 67025 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCAT 67084 ||||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| || Sbjct 15940 CGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGAT 15999 Query 67085 GCGCAAGCTCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAG 67142 ||| ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16000 GCGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAG 16057 Query 67143 TTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGC 67199 | || ||| || ||| ||| | ||| |||| || ||||| || || || Sbjct 16058 ATCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGT 16111 Query 67200 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 67259 || || ||| |||||||||||| || || |||| | || ||||||| | | | ||| Sbjct 16112 AACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAA 16171 Query 67260 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 67319 || ||||| | | ||||||| | ||||| || || || || || |||||| | ||| Sbjct 16172 GAGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCC 16231 Query 67320 CCGCCG 67325 ||||| Sbjct 16232 GCGCCG 16237 >seq11306 Length=553 Score = 178 bits (196), Expect = 6e-40 Identities = 216/294 (73%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 67150 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGA 67209 ||||||||||| | | || |||| || ||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 67210 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 67269 |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 67270 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 67329 | || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 67330 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 67389 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 67390 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 67443 || | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 263 >seq19644 Length=1527 Score = 136 bits (150), Expect = 2e-27 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 60936 CTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACC 60995 || || ||||||||||||||||| | ||| || |||| | | || || ||||||||| Sbjct 1174 CTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACC 1115 Query 60996 GTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTCGACGGCGAC 61049 ||| || | |||| || ||| | ||| | | | ||| |||||||| Sbjct 1114 ATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAGGACGGCGAT 1058 Query 61050 GCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCT 61108 || |||||||| |||| || |||||||||| ||||||| ||||||||| | Sbjct 1057 GCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTT 999 Query 61109 CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAA 61168 ||| ||| ||||||||||| ||| ||| || |||||||||| | || | Sbjct 998 GACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCG 939 Query 61169 GGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 61228 |||||| || ||||||||| |||||| ||||||| |||||||||||||| ||||| || Sbjct 938 CGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCG 879 Query 61229 GT 61230 || Sbjct 878 GT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244523850796680