Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19 145 2e-29 seq4444 118 3e-21 seq2249 93.3 1e-13 >seq19 Length=770976 Score = 145 bits (160), Expect = 2e-29 Identities = 664/1036 (64%), Gaps = 28/1036 (3%) Strand=Plus/Minus Query 155319 GCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTA 155378 || || |||||||| || ||||| || | |||||| | |||| ||| | ||| | | Sbjct 362637 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 362578 Query 155379 AATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGG 155438 |||| | | |||| || ||| | || || || ||||| || || | ||| ||||| Sbjct 362577 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 362518 Query 155439 CGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAAT 155497 | || | ||| | | | |||| | | || ||| |||| ||||||||| Sbjct 362517 CTGTGGCGCATGTTGGAATTTTTAG-CTTCCTCTACCGGATAATAATTATGATCAATAAT 362459 Query 155498 GTTATTTAAATTT---GTAACCA-ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAA 155553 ||||| | || ||| || ||| |||||| || ||||||| || |||| Sbjct 362458 TTTATTCAGGTTCAGGGTAGCCTGATA----GGTTACATCATATAATTTCTGATGATCAA 362403 Query 155554 ATGTTTTATCC-TCATTTACAAA-CATACCAAGACCAATAGACGCCAGATTACATACCGC 155611 | | ||| | | ||||| | | ||| |||| || ||||| |||||||| || Sbjct 362402 AC----TCTCCGTTGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGC 362348 Query 155612 AGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGT 155671 | ||| | | | | || |||| ||| || || ||||| ||||| |||||||| Sbjct 362347 AACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 362288 Query 155672 GCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGT 155731 |||||||| | |||||| ||||| ||||| ||||| || || | | || ||||| Sbjct 362287 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 362228 Query 155732 TCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTT 155791 ||| || || ||||||| |||||||| | ||| || || | || ||||| || Sbjct 362227 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTT 362168 Query 155792 GTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCCT-CACCGTA 155848 | | ||||| || || ||||||| ||| | || ||| || |||| | Sbjct 362167 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCAT-CG--AATTCTGCACCAAA 362111 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 ||||| |||||| ||| | || || || || | ||| | || | Sbjct 362110 GCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTC 362051 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 ||| | ||| || | |||| |||||| |||||||| | || || || Sbjct 362050 TACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAG 361991 Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTA-AGAATTCCTCAATATCAGGATGGTGTG 156027 || || | || || || || || || || | | || || || ||| | ||| || Sbjct 361990 TTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCAC-ATCTGCATGCCATG 361932 Query 156028 GCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAG 156084 ||||||| || || |||||| ||| || | || || |||||| || ||||| || | Sbjct 361931 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 361872 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || | || || || | |||||| | ||| |||||| || || || ||||| | Sbjct 361871 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 361812 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||||| || || | | || | ||||| || || ||||||||||||| | || Sbjct 361811 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 361752 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 ||||||| |||| || |||| ||||| | |||| ||||||||| || || | || Sbjct 361751 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 361692 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | |||| | |||| ||| | ||||||| || || | || || |||| || | Sbjct 361691 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 361632 Query 156325 GTGTTGCATGAATAAA 156340 | |||||||| |||| Sbjct 361631 GGGTTGCATGCGTAAA 361616 Score = 107 bits (118), Expect = 6e-18 Identities = 251/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||| |||||| || | || ||||||||||| ||||| || ||||| |||||| Sbjct 360118 CATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAAC 360177 Query 133271 TTAG----GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326 | | |||| || ||| | ||||| || || ||||||||||| |||||||| Sbjct 360178 CTTGCAGTGAAC----TTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGG 360233 Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386 | ||||| ||||||||| ||||| ||| || ||| | || || ||||| || Sbjct 360234 CTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTA 360293 Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445 || |||||| | | | || ||| || ||| | ||| ||| || |||||||| Sbjct 360294 TATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC-GTAGAGACGGTTCCTTGTG 360352 Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTA 133505 | || || ||| | || ||||| | ||||| ||| | | | |||||| Sbjct 360353 TAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGG------GCGGAAATTTTGCCG 360406 Query 133506 CTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTA 133565 ||| | || ||||| || | ||| || |||||||| ||||| || ||||| || | Sbjct 360407 AACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTTCGA 360466 Query 133566 TTTTTTGGCTTAAAAA 133581 | || ||| | ||||| Sbjct 360467 TCTTCTGGTTGAAAAA 360482 >seq4444 Length=6250 Score = 118 bits (130), Expect = 3e-21 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 302641 AGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATA 302700 ||||| ||||||||||||| || |||||||| | ||||| ||| || || | | Sbjct 3971 AGACCTTCACGACCACCCATTGCGTGGAAGAAGAACTCTTGTGGTGTCAGACCTCTCAGG 3912 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 ||||| |||| ||||||||||| ||| || | |||| ||| || || || ||| Sbjct 3911 TAGGAGTTCTCGACGAAACCACGACTCTCAGGACCGTTGTCGTCCTTTGTGAAATGCGGC 3852 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 || || | || || | ||| ||||||||||||| || || || ||||||||||| | Sbjct 3851 AGTGTGCGGTGCTGGAAACCGAATGGGATACGCTTACCCTCGACATTCTGCTGTCCGACA 3792 Query 302821 CACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || | ||||| || ||||| || | ||| | ||||| || || ||||| ||||| Sbjct 3791 CAGGCCATCATTTGAGAAATGTTGATGAATGA--ACCCTTTGAACCTGCATTCACCAT 3736 >seq2249 Length=5620 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||||| |||||||||||||||||| |||| ||| ||||||||| | || || | ||| || Sbjct 4254 AATCAAACAATCACGCTCCATTTCTCCGAGACGCAGACCACCACCACGTGCACGACCTTC 4195 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 || |||||||||||||| | || | ||||| | ||| || ||| || | Sbjct 4194 GGTTGGCTGACGAGTGAGCGTTACAGTTGGACCACGCGCACGGGCGTGCATCTTGTCCAT 4135 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||||| ||||| || |||||||| ||| || | ||||||| Sbjct 4134 CACCATGTGCTTCAGCTTTTGGTAGAAGATGGGTCCAAAGAAGATG 4089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471285304746499