Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq26023 331 3e-86 seq10590 163 9e-36 seq85 136 1e-27 seq25528 127 7e-25 seq18063 109 2e-19 >seq26023 Length=543 Score = 331 bits (366), Expect = 3e-86 Identities = 395/536 (74%), Gaps = 0/536 (0%) Strand=Plus/Minus Query 39744 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAG 39803 ||||||||||||||||||||||| |||||||||||||| | ||| || || | |||||| Sbjct 536 ATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCAC 477 Query 39804 CTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATG 39863 |||||||||||||||||||| || ||||||||| || | | ||| ||| Sbjct 476 GACGGGTAGTCGAACTGCGTGACGATCTGCCCGTCCTGCTCGCGGCGCATGATCGGAATG 417 Query 39864 TGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGG 39923 ||||| || || ||| ||||||||||| ||||| |||||||| ||| ||| || Sbjct 416 ATGTCGAGGAGCGGATCGGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGC 357 Query 39924 ACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCG 39983 || ||||||||||| |||||| ||||| |||| ||| || || || || | || Sbjct 356 TTCAGCCCTTCGAGACCCAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCG 297 Query 39984 TAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCT 40043 | | || || |||| || |||| ||||| ||||| | | || ||| ||||| Sbjct 296 ATCAGGGTCCTGAACTCGCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCG 237 Query 40044 TCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 40103 ||||||||||| |||||||||||| | ||| ||||||||| || ||| || Sbjct 236 TCGAGGGGCATGTCCTTGCCCATCACGGGCGGCGGCATCGCCTTGGTGAGGCGCTCCCCC 177 Query 40104 ACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATC 40163 | ||| || | ||||||| ||| | |||||||||| ||| | | ||||||| Sbjct 176 ATGCTGAACGGGAAGCCGAGCACTCGACCGGCGTCCTTCAGCGCCTGCTTGGACTTGATC 117 Query 40164 CGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGG 40223 ||||||||| ||||||||||||| |||| ||||||||| |||||||| | | Sbjct 116 GTTCCGTACGTGACGATCTGCGCGACGCGCTCGGATCCGTACTTCTCCGTGACGTAGTCG 57 Query 40224 ATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACAC 40279 ||||||||||| || ||||||||||||||||||| ||||| ||||||||||| || Sbjct 56 ATGACCTCGCCGCGGCGCCGGTCATCGAAGTCGACGTCGAAGTCGGGCATGGAGAC 1 >seq10590 Length=4137 Score = 163 bits (180), Expect = 9e-36 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 2622 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 2563 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || |||||||||||| || ||||||||| || ||||||| ||||||||||| Sbjct 2562 CAGGTCGAACTCCAGCGGGTCAAGATCGGTGATCTTCAGCGCGTAGGCCACCAGCGAACC 2503 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || || || || ||||| ||| || ||||| ||||||| ||| |||| || Sbjct 2502 GGCGCCGGAACCGCGTCCCGGGCCAACCGGCACGCCGTTATCCTTCGACCACTGGATAAA 2443 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGAT 40474 ||| || | |||||||| |||||||||||||||| |||| Sbjct 2442 CTCCATCACAATCAGGAAGTAGCCCGGGAACCCCATCTGGTTGAT 2398 Score = 102 bits (112), Expect = 3e-17 Identities = 212/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 ||||||||| || ||||||||||| | ||||| |||||| || |||| | | || Sbjct 3758 GCCGCCATGAACGGCGCCGGGTAGTGAGCCTTCAGCCACGCAGTCTGGTAAGACACCAGG 3699 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 || || || || ||||| | ||||||||| |||| || ||||| ||| || ||| Sbjct 3698 CCATAGGCGGCAGAGTGGGATTTGTTGAAGCCGTAACCGGCGAACTTTTCCACCAGGTCG 3639 Query 39219 CACA------CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG- 39271 | | | ||| || ||| ||| || | | | | |||| ||||| Sbjct 3638 AAGATGTTACCGGCCAGGTCGGC---GTCGATGTTG--TTGGTGGCGCAA--CCTTCAAT 3586 Query 39272 GAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAG 39331 |||| || || |||||||| |||||||||| ||||| ||||| || || || || Sbjct 3585 GAAGCCACCGCGCTGCTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCTCGACGCAG 3526 Query 39332 CAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTC 39391 || ||| || || ||||| || |||||||||||||| |||| || | |||||| || Sbjct 3525 CATGTCCGCGCCGCCGAGGGTATAGCCGGCCATGACCTGGGCAATCTGCATCACCTGTTC 3466 Query 39392 CTGGTAGATGAT 39403 || || | ||| Sbjct 3465 TTGATACAGGAT 3454 >seq85 Length=367292 Score = 136 bits (150), Expect = 1e-27 Identities = 262/381 (69%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 40111 AGGGCTTGTCGAGCACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCG 40169 ||||| | ||||||||||| |||| |||| || | || |||||||| | | |||| Sbjct 9189 AGGGCATTTCGAGCACGCG-GCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCG 9247 Query 40170 TACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTG-ACGTACTGGATGAC 40228 | || ||||||||| |||| ||| || ||||| | || || || ||||||| Sbjct 9248 AAGGTGATGATCTGCGCCACCTGATCGCGGCCATACTT-GGCCTGAACATAGCGGATGAC 9306 Query 40229 CTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGG 40288 |||| | || ||| | | |||||| ||||| | |||||||| || ||||| ||||| Sbjct 9307 CTCGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGG 9366 Query 40289 GTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAG 40348 || |||||||| ||||| | || | |||||| |||| |||||||||| || Sbjct 9367 ATTGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAG 9426 Query 40349 GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTT 40408 | ||||| || |||||||| || | ||||| || || || ||||| | | | Sbjct 9427 CGCATAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATG 9486 Query 40409 CTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTG 40468 | |||||||| ||| ||||| | |||| ||||||||| ||| | |||| | Sbjct 9487 GGCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCG 9546 Query 40469 GATGATCATGTCGATCTCGTA 40489 | |||| ||| ||||| || Sbjct 9547 GGTGATGATGGAAATCTCATA 9567 Score = 87.8 bits (96), Expect = 6e-13 Identities = 188/279 (67%), Gaps = 24/279 (9%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||| ||||| || ||||| ||||| ||||| | ||||| || || |||| ||| Sbjct 8430 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 8489 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGA 39426 |||| || | || | |||||| |||||||||||||| | | || || Sbjct 8490 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGA------------CGCCCTGGG 8537 Query 39427 TCTCC--GACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTT 39484 | ||| ||| | || | | | | || ||| ||||||| || ||| ||| | || || Sbjct 8538 TTTCCTTGAC-GAGA-TGGTCGATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATT 8595 Query 39485 CTTCCGGAGGGCGTAGTTCGTG-TGAGACCCCACGCCCATCGGACCCGGACGGTACAGCG 39543 ||| || | |||| ||| | || |||||||||||||||||||||||| Sbjct 8596 CTTGCGCGCGTTGTAGGTCGGGATG-------TTTTCCATCGGACCCGGACGGTACAGCG 8648 Query 39544 CGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCA 39582 | || | || ||||||||||| ||| ||||||| Sbjct 8649 CCACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTTCA 8687 >seq25528 Length=831 Score = 127 bits (140), Expect = 7e-25 Identities = 410/617 (66%), Gaps = 22/617 (4%) Strand=Plus/Minus Query 40715 CATCTCTTCGGCGGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTTCGGGTT 40774 |||||| | |||| ||| | |||||||||| ||| ||||| ||| |||||||||| Sbjct 635 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 576 Query 40775 GTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 40834 ||| | ||| | || | ||| |||||||| || || ||||| ||| | | ||| | | Sbjct 575 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGT-GCT 517 Query 40835 GGTGAC-GTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCC 40893 | || |||||| || ||||| ||| | ||| | | || |||| |||| ||| | Sbjct 516 GATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGAC 457 Query 40894 GGTACAGGTCG-TCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAGC 40952 || || ||| ||| || || ||||||||| | |||||||||||| ||| Sbjct 456 GGAGGAGATCGGTCATC-ACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCG 398 Query 40953 AGGTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCAGCCTCCTTCACG-GCCTCGTC 41011 | ||| || ||||| | ||| || || | || || | || || |||| Sbjct 397 AAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCC-GCGCGCGCAGCGTC 339 Query 41012 GTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCAGTCGTGACGAC 41071 |||||| ||||| || || ||| |||| | || ||||| || || || ||| Sbjct 338 GTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGAT 279 Query 41072 CAGGCCCTCGTTGT-GCTCGGCGACCAGCTCGAAGTCCATGCGCGGGTACTTCCCG-AGC 41129 ||| || | | | | || || | ||||||| |||||||||||| ||| | || Sbjct 278 CAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGT 223 Query 41130 AGGCCCTCCTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGGA-GCC--CGGTCTTG 41186 | |||||| | |||||| ||||||||| | |||||||| | ||| |||| | Sbjct 222 A-ACCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC 164 Query 41187 TTCGTGGAGAGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGACACGTCGTAACGCTTC 41246 | | | || || | ||| |||||||| ||| ||||| ||||||| | |||| Sbjct 163 TGACTCCA---CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTC 107 Query 41247 TGTTCGGGGGCTCCCCACTTGACGCGC-TCCTGGCTCTGC--CTCTTGTCGGGTGCCATG 41303 || ||||| | ||||||| |||||| || || | |||| | || |||| | | Sbjct 106 TGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACA 47 Query 41304 TAGGCTTCGATCCCGAT 41320 ||||| |||| |||||| Sbjct 46 TAGGCCTCGAGCCCGAT 30 >seq18063 Length=485 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40320 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40379 |||||||||||||||||||||||| | || ||||| |||||||| ||||| | || Sbjct 26 TCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCCGAT 85 Query 40380 CCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40439 || || || ||||| || || ||||| || ||||| |||| |||||| ||| Sbjct 86 CCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATTACG 145 Query 40440 ACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 | |||||||| ||||||||||||||||| || || || | |||| Sbjct 146 ATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163270054241586