Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq4092 134 2e-26 >seq4092 Length=20610 Score = 134 bits (148), Expect = 2e-26 Identities = 552/859 (64%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || |||||||| ||||| ||| ||||| ||||| || ||| ||| || | || ||| Sbjct 17814 AACGAAAACGCCAATAAGGACAGTAAAGTCATCCCGACCCAGCGCGACCTGCTGGCCGGT 17755 Query 172018 ACAGTTGCGAAACAATACGCACTCGAAGACTTTCTACCGAAGCAC-AT-TGCAGAAG-CA 172074 | || || || || ||||| | | || | || || ||| || || || | | Sbjct 17754 ATCGTCGCCAAGCACTACGCCCGGCAGCACCTGCTGCCC---CACGATGTGGTGATGGCC 17698 Query 172075 CATATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATTC 172134 || | ||| || || | |||||| | |||||| || || || ||| ||| Sbjct 17697 CACGAGCGCGGCATGATCCACTATCATGACCTCGATTACTCGCCCTTCTTCCCGATGTTC 17638 Query 172135 AACTGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGCT 172194 ||||| ||||| || ||| | ||||||||||| | || ||||| ||||| || || Sbjct 17637 AACTGCATGCTGATCGATCTGAAAGGCATGCTGACCCAGGGCTTTAAGATGGGCAACGCG 17578 Query 172195 GAGATCGAAGAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCACTCAGATCATACAA 172254 |||||||| ||| || |||| | || || | | | | |||||||| Sbjct 17577 GAGATCGAGCCGCCGAAGTCTATCTCTACCGCCACCGCGGTGACGGCGCAGATCATCGCC 17518 Query 172255 CAAGTAAGTAGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCA 172314 || || || || ||||||||||||| ||| | || | || || ||||| || || Sbjct 17517 CAGGTCGCCAGCCATATTTACGGCGGCACCACCATCAACCGCATCGATGAAGTGCTGGCG 17458 Query 172315 CCATATGTTCGTAAGTCGTAT--TACAAATGGCTTGAGGTTGGTCGC-GAAGAGC----- 172366 || |||||| || || | | |||| || | | |||| |||||| Sbjct 17457 CC----GTTCGTCAG-CGAAAGCTTCAAAAAGCATC-GCAAAATCGCCGAAGAGTGGCAG 17404 Query 172367 ATCCCGATTCAGACTCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGT 172426 |||||| || | ||| ||||| || || ||| ||| ||||| | Sbjct 17403 ATCCCG-----GATGCCGAAG--GCTAT----GCCCGCGCCCGTACCGAAAAAGAGTGCT 17355 Query 172427 ACGACGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGA 172486 ||||||| || || || | |||||| | || |||||| |||| || | ||||| |||| Sbjct 17354 ACGACGCCTTCCAGTCGCTGGAGTATGAGGTCAACACACTGCATACCGCCAACGGCCAGA 17295 Query 172487 CGCCATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAGA 172546 |||| ||| || | ||||| || || || |||||| ||| || ||| Sbjct 17294 CGCCGTTCGTCACCTTCGGGTTCGGCCTTGGCACCAGCTGGGAATCGCGGCTGATCCAGC 17235 Query 172547 AATGCATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCC 172606 | | ||||||| || || ||||| || || || || | ||||| ||| | |||| Sbjct 17234 AGTCGATTCTGCGCAACCGCATTGCCGGCCTCGGTAAAAATCGCAAAACCGCGGTGTTCC 17175 Query 172607 CGAAACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTACG 172666 ||||||| || ||| | ||| || || ||||| || ||||| ||| |||| Sbjct 17174 CGAAACTGGTGTTCGCGATCCGCGACGGCCTGAACCATAAGTTCGGCGACCCGAACTACG 17115 Query 172667 GCATTAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCT 172726 ||| || |||| || || || ||||| || ||||||||||| || |||||| | | || Sbjct 17114 ACATCAAACAGCTGGCGCTGGAGTGCGCCAGCAAGCGCATGTACCCGGATATCCTCAACT 17055 Query 172727 ATGAAAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTCT 172786 | || || | || || || || |||||| | |||||||| || || ||| Sbjct 17054 ACGATCAGGTGGTGAAAGTCACCGGGTCGTTTAAAACGCCGATGGGCTGCCGCAGCTTCC 16995 Query 172787 TAGGCGACTGGAAAAACGA 172805 | || | ||| ||||||| Sbjct 16994 TCGGGGTATGGGAAAACGA 16976 Score = 114 bits (126), Expect = 2e-20 Identities = 229/337 (68%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 ||||| ||| || || ||||| ||||| ||||||||||| || |||||| || || Sbjct 16566 TGGAAGGAAGAAACCGGCTACGGCTTTAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 16507 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 ||||| ||||| ||||| || | ||| || | | || | | |||||| Sbjct 16506 GATCGCTTCTGCCGTCTCGACACCGCCGAGTTTGGCGTGGTGGAAGGGGTAACCGACAAA 16447 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| |||||| | ||||| ||||| || || |||| ||| ||| Sbjct 16446 GGTTACTACACCAACAGCTTCCACCTCGACGTGGAGAAGAAGGTCAACCCGTACGATAAG 16387 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGCTATGCAGAG 173460 || || || ||||| ||||||| | || ||||| || ||||||||||| | ||| Sbjct 16386 ATCGATTTCGAAGCGCCGTACCCGCCGCTGGCCAACGGGGGGTTCATTTGCTACGGCGAG 16327 Query 173461 TTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGCTCATAG 173519 | |||||| || | | || |||| | || ||| || |||||||| ||| || Sbjct 16326 TACCCGAATATCCAGCATAACCTCAAGGCGCTGGAAGACGTGTGGGATTACAGCTATCAG 16267 Query 173520 CAAAGTTGCTTACTTCGGTACAAACACACCGATTGAT 173556 | | || | |||| ||| || || || ||||| ||| Sbjct 16266 C-ACGTGCCGTACTACGGGACCAATACGCCGATCGAT 16231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791627785443320