Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq2100 255 8e-63 seq1494 197 2e-45 seq345 145 1e-29 seq3094 120 4e-22 seq12 104 3e-17 >seq2100 Length=19628 Score = 255 bits (282), Expect = 8e-63 Identities = 248/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 98892 ACTATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAA 98951 || ||||||||||||| ||||| ||| |||| | | | || ||||| || || Sbjct 19066 ACCATGAAACAGTATCTTGATTTGATGCAGAAAGTGCTCACCGAGGGCACGCCAAAAAAT 19125 Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| Sbjct 19126 GACCGCACCGGCACTGGCACGATCTCCATTTTCGGCCATCAGATGCGTTTTAACCTGCAG 19185 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| ||||||||||| || |||||||| || || | ||||| || |||||||||||| Sbjct 19186 GAAGGCTTCCCGCTGGTGACCACCAAGCGCTGTCATTTACGCTCCATCATCCATGAACTG 19245 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||| | ||||||||||| ||| || ||| | || || || ||||| Sbjct 19246 CTGTGGTTCCTGCAGGGCGACACCAACATCGCCTATCTGCACGAGAACAACGTCACCATC 19305 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 |||||||| |||||||| | ||||||||||| || ||||| ||||| || |||||||| Sbjct 19306 TGGGACGAGTGGGCGGATGAGAATGGCGACCTGGGGCCGGTCTACGGCAAACAGTGGCGT 19365 Query 99192 GCATGGACTGCGCATGATG 99210 | ||| |||||| |||| Sbjct 19366 TCCTGGCCTGCGCCGGATG 19384 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 99307 ATATCGACCAGATTGCCAAAGTCATGGGCCAGTTGAAAAACGACCCGGATAATCGGCGTA 99366 ||||||||||||| || || ||| |||| |||||||||||||||| || || | Sbjct 19391 ATATCGACCAGATCAGCACGGTGATGAACCAGCTGAAAAACGACCCGGACTCCCGCCGGA 19450 Query 99367 TCATCGTTAGTGCATGGAACGTAGCTGACCTTGACGATATGGCCTTAGCTCCTTGCCACG 99426 ||||||| ||||||||||| | || || || | ||||| | || || ||||||| Sbjct 19451 TCATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACG 19510 Query 99427 CCTTCTTCCAGTTTTA 99442 ||||||||||||| || Sbjct 19511 CCTTCTTCCAGTTCTA 19526 >seq1494 Length=7401 Score = 197 bits (218), Expect = 2e-45 Identities = 325/468 (69%), Gaps = 8/468 (2%) Strand=Plus/Minus Query 87642 ATCATCGTCACTCGTCCGGTGCTCTCCGCAGATGAAGATTTAGGCTTCCTGCCCGGCGAC 87701 || || || || ||||| || || || || |||||| | |||||| | || || || Sbjct 925 ATTATTGTTACCCGTCCCGTTCTGCAGGCCGACGAAGATCTCGGCTTCTTACCGGGAGAT 866 Query 87702 GTTGCCGAAAAATTCGCCCCGTACTTCCGCCCTGTTTATGACGTTCTTCAAAAACGTCTC 87761 | ||||| || ||||| || || ||||| || ||||| || || || ||| | || Sbjct 865 ATCGCCGAGAAGTTCGCTCCCTATTTCCGACCGGTTTACGATGTGCTGGTGAAAAGGCTG 806 Query 87762 GGTAGCCGCTACCT----GCAATACTGCCTTAAGCCCGGTATCGACAAAGTGGAGATTGC 87817 || ||| ||| ||| |||||||| || | |||| ||| ||||| || || Sbjct 805 GGG----GCTTCCTTTATGCAGTACTGCCTGCGTCCGGAAATCGGCAAGGTGGAAATCGC 750 Query 87818 TCCTTTTGCGTACATGCGTGGCCGCAGTTTCGAAAATGCGGTTGTCATTTTAGATGAAGC 87877 || || || || ||||| || || | || ||||||||||| || ||| | || || || Sbjct 749 GCCGTTCGCCTATATGCGCGGACGTACCTTTGAAAATGCGGTGGTGATTCTGGACGAGGC 690 Query 87878 TCAGAACACTACTGCTCAGCAGATGAAGCTCTTCCTGACACGTATCGGGGAGAACTGTAT 87937 |||||| || || ||| |||||| | || | || || ||||||||||| | Sbjct 689 CCAGAACGTGACCGCAGCGCAAATGAAGATGTTTTTAACCCGCCTCGGGGAGAACGTGAC 630 Query 87938 CGTTATCGTAAACGGTGACGTCACACAGTGCGACTTGCCCAAAGGGGTGAAGTCTGGACT 87997 || ||||| || || || |||| ||||||||||||||| || |||| ||||| || Sbjct 629 GGTCATCGTCAATGGCGATATCACCCAGTGCGACTTGCCCTCTGGCGTGAGATCTGGCCT 570 Query 87998 GGCCGACGCGTTGACCCGTTTCGAGGAAGACGATTTAGTTGGCGTCGTTCGTTTTACGAA 88057 | ||| ||| || | ||||| ||||||||||| | | ||| |||| ||||| || | Sbjct 569 GAGCGATGCGCTGGCGCGTTTTGAGGAAGACGAGATGATCGGCATCGTGCGTTTCACCAC 510 Query 88058 AGACGACTGTGTGCGCTCTTTGCTTTGTCAGCGTGCGTTGAAAGCGTA 88105 || ||||| |||||||| || || ||||| || ||||||| || Sbjct 509 CGATGACTGCGTGCGCTCGGCCCTCTGCCAGCGGACGCTGAAAGCCTA 462 >seq345 Length=175672 Score = 145 bits (160), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| |||||||| | ||| | |||||| |||||||||| ||| | || Sbjct 150405 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 150464 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 | ||||| || | ||||||||| || || || || ||||| || ||| Sbjct 150465 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 150524 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||||||||||| || || ||| || || || || || || || || || Sbjct 150525 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 150584 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 ||||| |||||||| ||| | || ||||| ||||| ||||| || || | |||||||| Sbjct 150585 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 150644 Query 99192 GCATGGACTGCGC 99204 | ||| |||||| Sbjct 150645 TCCTGGCCTGCGC 150657 >seq3094 Length=9505 Score = 120 bits (132), Expect = 4e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 99711 GTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACT-CA 99769 |||||||||||||| ||| || ||||| |||||||| || ||| | | || || Sbjct 9505 GTCTGGACCGGCGGCGATACCCACCTGTACAGCAACCATCTTGAGCAGAC-CAACCTGCA 9447 Query 99770 GTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTAT 99829 | || | || |||||| || |||| |||||| | |||||||| ||||||| || || Sbjct 9446 GCTAAGCCGCGAACCGCGTCCGCTGCCGAAGCTGGTCATCAAACGCAAGCCGGCGTCGAT 9387 Query 99830 CTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAA 99889 |||||||| || ||||| || || || ||||| ||||| || || |||| ||||| Sbjct 9386 TTTCGACTACCGCTTTGAAGACTTCGAGATTGAAGGTTACGATCCGCATCCGGGCATTAA 9327 Query 99890 AGCACCGGTGGCGAT 99904 ||| ||||||||||| Sbjct 9326 AGCGCCGGTGGCGAT 9312 >seq12 Length=339259 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| | ||| | || || |||||||| | ||| || ||||| |||||| | |||||| Sbjct 190666 AAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAAC 190725 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 | || ||||| || || ||||| || ||||| || | || |||||||| Sbjct 190726 CTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCAC 190785 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 |||||| | ||||| | | || ||||||||||| |||||||||| || |||| Sbjct 190786 GAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTA 190845 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 | || ||||| || ||||| || |||| || ||||| || || || || || || Sbjct 190846 AAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAA 190905 Query 99186 TGGCGGGCATGG 99197 ||||| ||||| Sbjct 190906 TGGCGTTCATGG 190917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716383943663080