Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq360 158 4e-34 seq97 109 2e-19 seq7234 107 6e-19 seq12700 86.0 2e-12 >seq360 Length=29890 Score = 158 bits (174), Expect = 4e-34 Identities = 213/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 33176 GAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 |||| | ||||| || || | | || | ||| || || ||||||||||| || | Sbjct 27573 GAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACA 27514 Query 33236 TGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATA 33295 |||| |||||||||||| ||| | | |||||||| || || ||| || | Sbjct 27513 TGCCAAGTGGCGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACA 27454 Query 33296 AAGCA-ACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAG 33354 | ||| || || |||| |||||||||||| || ||||| ||||| || | ||||| || Sbjct 27453 A-GCAGACCGGCGAAATGAAAGAGCAGACCGAGTGGCACCGCGTTGTGCTGTTCGGCAAA 27395 Query 33355 CTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAA 33414 ||||| || || ||||| || || ||||| ||||||||||||||||| | ||||| | Sbjct 27394 CTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATTGAAGGCCAG 27335 Query 33415 TTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAA 33468 | ||||| ||||| ||||| |||||| |||| || |||||||| || ||| Sbjct 27334 CTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAA 27281 >seq97 Length=44549 Score = 109 bits (120), Expect = 2e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCG 33222 || |||||| ||| || || ||||| || || | | || || ||| |||| ||| Sbjct 4701 ATCATGGCAGTTCGTGGCATTAACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCG 4760 Query 33223 GAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAG 33282 ||||| || || || || ||||| ||| || ||| | || || || || Sbjct 4761 GAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAA 4820 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 ||| || ||| |||||||| | | |||||||||||||||||||||||||| Sbjct 4821 ACCTGGCGTGACAAACAGACAGGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTG 4880 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 | ||||| ||||| || || |||||||||||||| |||||||| ||| | ||||| || Sbjct 4881 CTGTTCGGCAAGCTCGCGGAAGTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTAC 4940 Query 33403 GTAGAAGG 33410 | ||||| Sbjct 4941 ATCGAAGG 4948 >seq7234 Length=2716 Score = 107 bits (118), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 4895 CCAGATTTTATTTACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATT 4954 |||||| || | | | || |||| | |||||||||||| || | ||| |||||||| || Sbjct 531 CCAGATCTTCTGTTCGGCGTTCTGGCGGGCAATCTTGCGGCCCACTTCGGCGTCGAAGTT 472 Query 4955 CTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGAC 5014 ||| ||||||||||| ||||| || || || |||||||| ||||| ||| |||| ||| Sbjct 471 CTCCGGACTGGCGCATGCGCTCTCACCGGTGACGGTGAAACCGTTGCGCAGGACCAGGAC 412 Query 5015 GCAAAAGGT 5023 || ||||| Sbjct 411 ACAGAAGGT 403 >seq12700 Length=2524 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 33249 CGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCAACAGGGGA 33308 ||| ||| ||| ||| |||||| || || ||||||| ||| || ||| || | Sbjct 230 CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCA 289 Query 33309 AAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGC 33368 ||| ||| | || |||||||| || ||| || ||||| ||| | |||||| | || Sbjct 290 GAAGGTCGAGAAAACCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGC 349 Query 33369 TGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAA 33413 || ||||||||||||||||| || ||||| || | ||||| || Sbjct 350 CGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAA 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993835248236