Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq12517 107 2e-18 seq19411 91.5 2e-13 seq103 89.7 6e-13 seq16 86.0 7e-12 >seq12517 Length=681 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 76 Query 148191 TCCTGCCACCCCGA 148204 ||||| | |||||| Sbjct 75 TCCTGTCGCCCCGA 62 >seq19411 Length=388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 40 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAAT 99 Query 9833 CCGCTATTCTCCA 9845 | ||| ||||| Sbjct 100 CTCCTAGGCTCCA 112 >seq103 Length=5517 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2102 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 2161 Query 9832 TCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 2162 TCCGTTATTCTCCA 2175 >seq16 Length=176877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 90253 GGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGAC 90312 Query 9832 TCCGCTATTCTCCA 9845 |||||||||||||| Sbjct 90313 TCCGCTATTCTCCA 90326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549428472606440