Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq9108 277 3e-69 seq2671 111 3e-19 seq48 86.0 1e-11 seq19 86.0 1e-11 >seq9108 Length=3693 Score = 277 bits (306), Expect = 3e-69 Identities = 314/416 (75%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || ||||| || ||||| || || | |||||| || ||||| || Sbjct 1915 CTGGCCCTGATACTTGCCGCCACGGTCCTTATAGGACACTTCGCACTCTTCGTCGGATTC 1974 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 ||| ||||||||||||||||| |||||||| ||||| | ||||||| | |||| || Sbjct 1975 GAAGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATTTTTGCCGGCAAGGTGGTGGT 2034 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| || || || |||||||| || || |||||||||||||||||||| Sbjct 2035 GTTGGAGAACTCCAGGGTGACGTGCCCTTCCCATTCCGGCTCCAGCGGCGTCACGTTGAC 2094 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || ||||||||||||||||| || |||| || | ||||| || ||||| Sbjct 2095 GATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAGGCAGATAGTCAGGACATTACGCGG 2154 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCT 35764 || |||||| ||||||| ||||| ||||| || ||| ||| ||||| || | | | Sbjct 2155 GATACGGAAGAATTCGACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGGATGATGCAGAC 2214 Query 35765 GTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGC 35823 ||| ||| | || | | | || || |||||||| |||||||| || ||| Sbjct 2215 GTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCG 2273 Query 35824 TGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATA 35878 ||||||||||||||| || | |||||||||| ||| || ||||| || || || Sbjct 2274 AGTTGATGTTGGTGAACACCTTGAACTCATCGGC-GCAGCGTACGTCGTAGCCGTA 2328 >seq2671 Length=2308 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| ||||||||||||||||||||||||||||| || || | || || || || | Sbjct 727 GTTCCAGGCGTGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 668 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 667 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGCTG 609 >seq48 Length=607718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 400862 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 400808 >seq19 Length=770976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 603554 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 603608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825625385581080