Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq47 190 1e-43 seq177 188 3e-43 seq11306 172 3e-38 seq19644 136 2e-27 >seq47 Length=21181 Score = 190 bits (210), Expect = 1e-43 Identities = 447/666 (67%), Gaps = 19/666 (3%) Strand=Plus/Plus Query 66121 TGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTA 66180 |||||| ||| |||||||||| | ||||||| ||| |||||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 66181 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66240 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66241 TCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGA 66300 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66301 GCACTCCCTGGACCCCGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTG 66358 || | ||||| || | || || | || || || || || |||||||||| || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG 15820 Query 66359 GTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66417 || | |||||||||||| ||||||||||| ||||||||| |||| || | || Sbjct 15821 -TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTC 15879 Query 66418 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 66477 ||| | | | | ||||||| ||||| || ||||| || |||| || || | Sbjct 15880 TGGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAAT 15939 Query 66478 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66537 ||||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| || Sbjct 15940 CGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGAT 15999 Query 66538 GCGCAAGCTCACTGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAG 66595 ||| ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16000 GCGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAG 16057 Query 66596 TTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGA 66652 | || ||| || ||| ||| | ||| |||| || ||||| || || || Sbjct 16058 ATCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGT 16111 Query 66653 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 66712 || || ||| |||||||||||| || || |||| | || ||||||| | | | ||| Sbjct 16112 AACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAA 16171 Query 66713 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCC 66772 || ||||| | | ||||||| | ||||| || ||||| || || |||||| | ||| Sbjct 16172 GAGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCC 16231 Query 66773 CCGCCG 66778 ||||| Sbjct 16232 GCGCCG 16237 >seq177 Length=203703 Score = 188 bits (208), Expect = 3e-43 Identities = 402/598 (67%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66182 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66241 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66242 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66301 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66302 CACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66361 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66362 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66421 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66422 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66479 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 66480 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66539 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 66540 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66599 ||||||| || | |||| ||| | ||||| || | | |||||||| | | Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 104023 Query 66600 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTT 66659 || |||||||||| ||| | ||| || ||| ||||| |||||||| || || Sbjct 104024 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 104080 Query 66660 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66719 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 104081 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 104140 Query 66720 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 66777 | |||| |||||||||| ||||| || || || |||||||||||||| || || || Sbjct 104141 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 104198 >seq11306 Length=553 Score = 172 bits (190), Expect = 3e-38 Identities = 215/294 (73%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 66603 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGA 66662 ||||||||||| | | || |||| || ||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 66663 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66722 |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 66723 AGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 66782 | || ||||| ||||||||| |||| || || |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 66783 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 66842 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 66843 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66896 || | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 263 >seq19644 Length=1527 Score = 136 bits (150), Expect = 2e-27 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 60587 CTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACC 60646 || || ||||||||||||||||| | ||| || |||| | | || || ||||||||| Sbjct 1174 CTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACC 1115 Query 60647 GTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTCGACGGCGAC 60700 ||| || | |||| || ||| | ||| | | | ||| |||||||| Sbjct 1114 ATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAGGACGGCGAT 1058 Query 60701 GCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCT 60759 || |||||||| |||| || |||||||||| ||||||| ||||||||| | Sbjct 1057 GCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTT 999 Query 60760 CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAA 60819 ||| ||| ||||||||||| ||| ||| || |||||||||| | || | Sbjct 998 GACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCG 939 Query 60820 GGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 60879 |||||| || ||||||||| |||||| ||||||| |||||||||||||| ||||| || Sbjct 938 CGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCG 879 Query 60880 GT 60881 || Sbjct 878 GT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244866133005409