Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq98 257 4e-64 seq44 250 5e-62 seq8472 122 2e-23 seq995 80.6 6e-11 >seq98 Length=12337 Score = 257 bits (284), Expect = 4e-64 Identities = 171/189 (90%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 26365 CAACAGCGATCCTGGATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGA 26424 |||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||| Sbjct 9827 CAACAGCGCTCCTGGATTGACTGCTGCATCACTCAACCACGCTGAATATCAAAGGAGAGC 9886 Query 26425 GTTACCGGTTAAAAGAGAAACGTAAAGCTGGAGTGCTGACCAAAAACACAACGCCAATCA 26484 |||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||| ||| Sbjct 9887 GTTACCGGTTAAAAGAGAAACGTAAAGCTGTGGTGATGACCCAAAACGCAACGCCTGTCA 9946 Query 26485 GTGATGATGAAATGGTGGAAAGCGGACAGCATCAGTAACGAAAGTAT-TTAGCGGGCATG 26543 |||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| | | Sbjct 9947 GTGAGGATGAAATGGTGAAAAGCGGACAGCATCAGTAACGGAAGTATCTTAGCGGGTACG 10006 Query 26544 AAAATGGCA 26552 ||||||||| Sbjct 10007 AAAATGGCA 10015 Score = 233 bits (258), Expect = 4e-57 Identities = 174/203 (86%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 24752 CAGAGAATGTCTGGAATAGCGAGGTTATCTTCGCGGAGATTAAGGCAATGGGTTATACGG 24811 ||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||| Sbjct 9628 CAGAGAATGTCCGGAATGACGAGGTTATCTTTGCGGAGATTAAGGCAATGGGCTATACGG 9687 Query 24812 GCGGACGTTCCATGCTGCGTTACTACATCCAGCCCAAACGTAAAATGCGTCCGTCAAAAA 24871 || || ||||||||| |||||||||||| |||||| |||||||||||| |||||||||| Sbjct 9688 GCCGATGTTCCATGCCGCGTTACTACATTCAGCCCGGACGTAAAATGCGCCCGTCAAAAA 9747 Query 24872 GAACAGTTCGCTTCGAAACTCAGCCTGGATACCA--GCTCCAGCATGACTGGGGCGAAGT 24929 |||| |||||||||||||||||||| |||||||| |||| || | ||| ||||| Sbjct 9748 GAACGGTTCGCTTCGAAACTCAGCCAGGATACCACCTCTCCGCCACACCCGGGAAGAAGT 9807 Query 24930 TGAGGTGGAGGTTGCCGGGCAAC 24952 ||| ||| ||||||||| |||| Sbjct 9808 TGATATGGTGGTTGCCGGACAAC 9830 Score = 131 bits (144), Expect = 4e-26 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 24669 ATACCCTGAACCGCCAGCCAGAAAGACCCGCCACAAAATGGTTAAGCTGAAACCGTTTAT 24728 || |||||||||||||||||||||||| ||||||||| || |||||||||| ||||||| Sbjct 7100 ATCCCCTGAACCGCCAGCCAGAAAGACTGGCCACAAAAGGGGTAAGCTGAAATCGTTTAT 7159 Query 24729 GGATTACATCGACATGCGCCTGGCAGAGAATG 24760 ||||||||||||||| ||||||||||||||| Sbjct 7160 GGATTACATCGACATATGCCTGGCAGAGAATG 7191 >seq44 Length=21063 Score = 250 bits (276), Expect = 5e-62 Identities = 175/198 (88%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 24454 TCAGCGCCAGTGATATAAGACGGTAATTCGCCATTTGGATTGTC-CGCTCCACCCAACAT 24512 ||||||||| |||||||||||||||| || ||||||||||| | || |||| ||||||| Sbjct 769 TCAGCGCCAATGATATAAGACGGTAAATCACCATTTGGATTAGCTCGATCCATCCAACAT 710 Query 24513 GTTGTTTCCTTAAGGTTCTCACACCAGAAAGGACATCAACATGCTGAGCAGAGAGGACTT 24572 |||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||| Sbjct 709 GTTGTTTCCTGGAGGTTCTCACATCAGAAAGGACATCAACATACTGAGCAGAGAAGACTT 650 Query 24573 TTACATGATAAAGCAAATGCGCCAGCAGGGCGCGTACATCGTCGATATTGCGACTCAGAT 24632 ||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||| | Sbjct 649 TTAGATGGTAAAGCAAATGCGCTAGCAGGGCGAGTACATTGTCGATATTGCGACTCAGGT 590 Query 24633 TGGTTGCTCTGAACGGAC 24650 ||||| ||||| || || Sbjct 589 TGGTTATTCTGAGCGAAC 572 >seq8472 Length=1183 Score = 122 bits (134), Expect = 2e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 12625 AGGATGCCACCACAGCGCGAAAAGGTCTTGTCCAGCTCAGTAGCGCCACCAACAGCGATT 12684 ||||||| | ||| || ||| || | || |||||||| || || ||||||||| || Sbjct 210 AGGATGCGAGCACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGCACTT 151 Query 12685 CTGAAACGCTTGCGGCAACACCAAAAGCGGTGAAGTCTGCCTATGACAATGCTGAAAAAC 12744 | || | || |||||||| ||||| || || || | |||||||||||||| || |||| Sbjct 150 CCGAGTCACTGGCGGCAACGCCAAAGGCAGTAAAAGCAGCCTATGACAATGCAGAGAAAC 91 Query 12745 GTCTTCAGAAAGATCAGAACGGTGCGGATATTCCGGGAAAGG 12786 |||| |||||||| |||||||| || ||||| || | |||| Sbjct 90 GTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGG 49 >seq995 Length=35532 Score = 80.6 bits (88), Expect = 6e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 22691 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 22734 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 25604 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 25647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107451970492660