Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq177 201 6e-47 seq47 190 1e-43 seq11306 179 2e-40 seq19644 129 3e-25 >seq177 Length=203703 Score = 201 bits (222), Expect = 6e-47 Identities = 405/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66395 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66454 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66455 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66514 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66515 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66574 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66575 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66634 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66635 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66692 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 66693 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66752 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 66753 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66812 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 104023 Query 66813 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTT 66872 || |||||||||| ||| | ||| || ||| ||||| ||||||||||| || Sbjct 104024 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 104080 Query 66873 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66932 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 104081 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 104140 Query 66933 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66990 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 104141 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 104198 >seq47 Length=21181 Score = 190 bits (210), Expect = 1e-43 Identities = 447/666 (67%), Gaps = 19/666 (3%) Strand=Plus/Plus Query 66334 TGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTA 66393 |||||| ||| |||||||||| | ||||||| ||| |||||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 66394 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66453 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66454 TCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGA 66513 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66514 GCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTG 66571 || | ||||| |||| || || | || || || || || |||||||||| || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG 15820 Query 66572 GTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66630 || | |||||||||||| ||||||||||| ||||||||| |||| || | || Sbjct 15821 -TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTC 15879 Query 66631 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 66690 ||| | | | | ||||||| ||||| || ||||| || |||| || || | Sbjct 15880 TGGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAAT 15939 Query 66691 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66750 ||||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| || Sbjct 15940 CGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGAT 15999 Query 66751 GCGCAAGCTCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAG 66808 ||| ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16000 GCGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAG 16057 Query 66809 TTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGC 66865 | || ||| || ||| ||| | ||| |||| || ||||| || || || Sbjct 16058 ATCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGT 16111 Query 66866 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 66925 || || ||| |||||||||||| || || |||| | || ||||||| | | | ||| Sbjct 16112 AACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAA 16171 Query 66926 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 66985 || ||||| | | ||||||| | ||||| || || || || || |||||| | ||| Sbjct 16172 GAGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCC 16231 Query 66986 CCGCCG 66991 ||||| Sbjct 16232 GCGCCG 16237 >seq11306 Length=553 Score = 179 bits (198), Expect = 2e-40 Identities = 234/322 (73%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 66816 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGA 66875 ||||||||||| | | || |||| || ||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 66876 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66935 |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 66936 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 66995 | || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 66996 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 67055 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 67056 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCA---AGTACGGGG 67112 || | | ||| ||| | | | ||||||||||||||| | |||| || | |||| | Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACGACGGTG 257 Query 67113 ACAAGAACGTCGCCCAGGGCAA 67134 || ||| | | ||||||||| Sbjct 256 ACCAGA---TGGGCCAGGGCAA 238 >seq19644 Length=1527 Score = 129 bits (142), Expect = 3e-25 Identities = 218/311 (70%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 60593 GTCGGCACCCTTACCGCCGACCCCGAGCTGCGGTTCACTTCCGGTGGGCAGGCCGTCGCC 60652 || || | ||| || ||||||||||||||||| | ||| |||| | | || || Sbjct 1183 GTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCG 1124 Query 60653 AACTTCACCGTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTC 60706 ||||||||| ||| || | |||| || ||| | ||| | | | ||| Sbjct 1123 AACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAG 1067 Query 60707 GACGGCGACGCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTAGC 60765 |||||||| || |||||||| |||| || |||||||||| ||||||| |||| || Sbjct 1066 GACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGC 1008 Query 60766 GGAAAGCCTCCAGAAGGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTT 60825 || | ||||||| ||||||||||| ||| ||| || |||||||||| Sbjct 1007 GGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTA 948 Query 60826 CGAGACCAGGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCC 60885 | || | | || ||| || ||||||||| |||||| ||||||| |||||||||||||| Sbjct 947 CCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCC 888 Query 60886 GTCGCTGCGGT 60896 ||||| |||| Sbjct 887 CTCGCTCCGGT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244024822529748