Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq11225 187 7e-43 seq360 134 4e-27 seq97 118 3e-22 seq12700 113 1e-20 seq76 109 2e-19 seq4750 102 2e-17 seq1200 100 8e-17 seq102 89.7 1e-13 seq85 89.7 1e-13 seq13381 82.4 2e-11 seq501 82.4 2e-11 seq46 82.4 2e-11 >seq11225 Length=5908 Score = 187 bits (206), Expect = 7e-43 Identities = 220/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 23414 GGCGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGT 23473 ||||||| || |||||| ||||| ||| | | ||| || || || |||||||||| Sbjct 4976 GGCGACCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGT 5035 Query 23474 AGTTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATT 23533 || || | |||||||||||||||| ||| || | || |||| || ||| | Sbjct 5036 AGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACT 5095 Query 23534 CACTTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGC 23593 || || || ||||||||||| || || || ||||||| ||||||||||||||| |||| Sbjct 5096 GGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGC 5155 Query 23594 GGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACG 23653 ||||||| ||||| |||| ||| |||||||||||| || |||||| |||| | Sbjct 5156 GGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGG 5215 Query 23654 TGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||||||| | ||||| ||||| | |||||| | |||||| ||||||||||| Sbjct 5216 TGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTC 5273 >seq360 Length=29890 Score = 134 bits (148), Expect = 4e-27 Identities = 196/274 (72%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 23451 GTCCACCACAATTTCGGTGGTGTAGTTGGTCGCGCCGTCTTTTTC---CCACTTGCGTGT 23507 || |||||| | |||||||||||| ||| | ||| || || ||||||||| || Sbjct 27269 GTTCACCACCACTTCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGT 27328 Query 23508 CTGCAGCTTGCCGATGATCGCGCAT-TCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 |||||| ||| || | || | | || || ||||||||||| || || | | Sbjct 27329 ACGCAGCTGGCCTTCAAT-GTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTT 27387 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGG 23626 | || | |||||||| | ||| ||||||||||| ||||||| || || ||||||| Sbjct 27388 CCGCCAGTTTGCCGAACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGG 27447 Query 23627 TCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGT 23686 |||||||||| ||||| ||| || || ||||| ||| |||| ||| || |||| Sbjct 27448 TCTGCTTGTCACGCCAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCAC 27507 Query 23687 TTTGCAGGTAGCGCACTTCCGGGTCATTACCCAG 23720 || ||| |||||| ||||||||||| | ||||| Sbjct 27508 TTGGCATGTAGCGTACTTCCGGGTCCTGCCCCAG 27541 >seq97 Length=44549 Score = 118 bits (130), Expect = 3e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| ||||| || | || |||| ||||||||| | ||| ||||| ||| Sbjct 4927 CCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGC 4868 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||||||||||||||||| Sbjct 4867 CATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCG 4808 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| || || || Sbjct 4807 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 4749 Query 23718 CAGGCGGCC 23726 |||||| || Sbjct 4748 CAGGCGTCC 4740 >seq12700 Length=2524 Score = 113 bits (124), Expect = 1e-20 Identities = 187/268 (70%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| ||||| ||||| |||||||| ||| | ||||||||||||||||| ||| Sbjct 455 TGTCGACCACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGN 399 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 |||||||| ||| | | || |||||||| || || ||||| |||| Sbjct 398 N----AGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACCGGCGATCT 343 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGC 23623 | || ||||||||||| | | || |||||||||||||| || | |||| || || Sbjct 342 CTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT---CTGGC 286 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 |||| |||||||| |||| ||| || ||||| || | |||| ||||| | | Sbjct 285 CGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTAC 226 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| ||| |||||| ||||| || || Sbjct 225 CGTTCGGCAAGTAGCGAACTTCGGGATC 198 >seq76 Length=48202 Score = 109 bits (120), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| || || || | || |||| ||||||||| | ||| ||||||||| Sbjct 1547 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 1488 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||| |||| || |||||| Sbjct 1487 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 1428 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| ||||| || Sbjct 1427 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 1369 Query 23718 CAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||| || || | ||| || ||||| Sbjct 1368 CAGACGCCCGACGAGGATGACCTTGTT 1342 >seq4750 Length=4641 Score = 102 bits (112), Expect = 2e-17 Identities = 231/336 (69%), Gaps = 21/336 (6%) Strand=Plus/Minus Query 23418 ACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTA--G 23475 |||||| || ||| | | | ||| ||| | |||| || | ||||||||||||||| | Sbjct 4315 ACCACCCAGGAGCTGCATTCTGCC-CTGCA--TGTCGACGATAATTTCGGTGGTGTACCG 4259 Query 23476 TTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCA 23535 || | | ||||||||||||||| ||||| || ||||| || ||| | || | Sbjct 4258 TTTGATAC--CGTCTTTTTCCCACTCTCGTGTTTGAAGCTTACCTTCGAT---GTATAC- 4205 Query 23536 CT----TCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGAC 23591 || ||| || ||||||||||| || || || || ||||| || || || || || Sbjct 4204 CTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAAC 4145 Query 23592 GCGGTGCCATTCGGTCTTTTC--CTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCC 23649 |||||||||||||||||||| ||| || || || |||||||| |||| || Sbjct 4144 ACGGTGCCATTCGGTCTTTTCGACTT--TCTGTCCCGTTTGCTTGTCAGTCCACTGCTCA 4087 Query 23650 GACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGG 23709 || || ||||||| ||| || |||| ||||| | | |||||| ||| || Sbjct 4086 CTTGTTGCAAGGCTGAGATTGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGA 4027 Query 23710 TCATTACC-CAGGCGGCCAATCAGGTCTACTTTGTT 23744 || | ||| |||| ||||| || | ||||| || Sbjct 4026 TCTTGACCACAGG-TGCCAACCAAGATCACTTTATT 3992 >seq1200 Length=6265 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 5091 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 5032 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 5031 CAGCTGAGCTACGGG 5017 >seq102 Length=326246 Score = 89.7 bits (98), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 13/170 (8%) Strand=Plus/Minus Query 23496 CCACTTGCGTGTCTGCAGCTTGCC-----GATGATCGCGCATTCACTTCCCTTGCGCAGA 23550 ||||||||| ||||||||| ||| ||| | | ||| | |||| ||| || Sbjct 30790 CCACTTGCGGGTCTGCAGCGCGCCTTCCAGATAAACCTTCATGCCCTTC--TTG---AGG 30736 Query 23551 TACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACA---CGACGCGGTGCCATTCGGTC 23607 |||| | || | || ||| | ||| || ||| | |||||| ||||||||||||| Sbjct 30735 TACTGTTCAGCCACCTTGGCCAGGTTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTC 30676 Query 23608 TTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGC 23657 |||||||||||||||||| | | |||||| |||| ||||||| ||||| Sbjct 30675 TTTTCCTTGCGCTCGCCGCTGTTCTTGTCGCGCCAGCTTTCCGAGGTGGC 30626 >seq85 Length=367292 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 |||||| |||| | ||||||||||| | |||||| ||||||||||| |||||||||| Sbjct 146430 TGGCGATCCCGGCTGGATTCGAACCAGCGACCGTCGGCTTAGAAGGCCGGTGCTCTATCC 146489 Query 21123 AGCTGAGCTACGGGGCC 21139 |||||||||||||| || Sbjct 146490 AGCTGAGCTACGGGACC 146506 >seq13381 Length=253 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 21069 CCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGA 21128 ||||| ||||||||||||||| |||| |||||| | ||||||| ||||||||| |||| Sbjct 5 CCCCGGCAGGATTCGAACCTGCGACCTTTCGCTCCGGAGGCGAACGCTCTATCC-CCTGA 63 Query 21129 GCTACGGGGCCG 21140 ||||||||| || Sbjct 64 GCTACGGGGGCG 75 >seq501 Length=12468 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 ||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 11033 ATGGCACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 11092 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||| ||| Sbjct 11093 CAGCTGAGCTAAGGG 11107 >seq46 Length=971285 Score = 82.4 bits (90), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| ||||||||||||||||||||||||| | ||| | ||| | |||||||| Sbjct 627750 ATGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTATC 627691 Query 21122 CAGCTGAGCTACGGGGCCGATTAGGCGGCG 21151 ||||||||||||||| | || |||| ||| Sbjct 627690 CAGCTGAGCTACGGGTGC-ATGAGGCTGCG 627662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139236512880724