Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq3869 673 0.0 seq4256 95.1 2e-14 seq2048 95.1 2e-14 >seq3869 Length=8584 Score = 673 bits (746), Expect = 0.0 Identities = 830/1122 (74%), Gaps = 27/1122 (2%) Strand=Plus/Minus Query 71287 ACTAAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGT 71346 || |||||||||||| || ||||| ||||| | || ||| |||||||||| | || Sbjct 2970 ACGAAAAACGATCAGCTGCTGGAACCTATGTTTTTTGGCCAGCCGGTTAACGTGGCCCGC 2911 Query 71347 TATGATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTC 71406 || |||||||| || ||| | || |||||||||||||| || || || || |||||| Sbjct 2910 TACGATCAGCAAAAATACGACATCTTTGAAAAGCTGATTGAAAAGCAGCTCTCCTTCTTC 2851 Query 71407 TGGCGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGAT 71466 ||||| || |||||||| || ||||| | || || ||||||| ||||| | |||| || Sbjct 2850 TGGCGCCCGGAAGAGGTTGACGTTTCCCGCGATCGCATCGACTACCAGGCGCTGCCGGAA 2791 Query 71467 CATGAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAG 71526 ||||||||||| || ||| | |||||||| ||||| || ||||| ||||| || ||| Sbjct 2790 CATGAAAAACATATTTTCATCAGCAACCTGAAGTACCAGACGCTGCTCGACTCCATCCAG 2731 Query 71527 GGTCGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCT--ATCCCGGAACTCGAAACCT 71584 || ||||||||||| ||||| ||||||||| ||| ||| |||||||| || || |||| Sbjct 2730 GGCCGTAGCCCGAATGTGGCGTTGCTGCCG--CTGATCTCCATCCCGGAGCTGGAGACCT 2673 Query 71585 GGATTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCACATCATCC 71644 || | ||||||||||| ||||| || || ||||||||||| || ||||| |||||||||| Sbjct 2672 GGGTAGAAACCTGGGCCTTCTCCGAGACCATTCACTCGCGTTCGTACACTCACATCATCC 2613 Query 71645 GTAATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGACCAACGAACACATCA 71704 | || ||| | | ||||| | | |||||| || |||||||| |||||||| || ||| Sbjct 2612 GCAACATCGTCAACGACCCGGCGACCGTGTTCGACGACATCGTCACCAACGAGCAGATCC 2553 Query 71705 AAGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCGAAATGACCATGTACC 71764 | ||||| || | || | | |||||||| ||||||||||||||||| ||| Sbjct 2552 AGAAACGTGCGGAAGGCATCTCTCACTATTACGATTCGCTGATCGAAATGACCAGCTACT 2493 Query 71765 TCAACTTACTGGGTGAAGGTACTCATGTAATCAATGGTAAGAAAGT---CGTGGTCTCGA 71821 | | ||||| ||||| || || |||| || || | || ||| | || Sbjct 2492 GGCATCTGCTGGGCGAAGGCACCCACACCGTCAACGGCAAAACCGTGACCGT-GAATCTG 2434 Query 71822 TGCGTGCT-ATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCC 71880 ||| ||| | ||| | |||| |||||| | || || || | ||||||| Sbjct 2433 CGCGAGCTGAAAAAGAAAC---TCTATCTGTGCCTGATGAGCGTTAATGCCCTGGAAGCG 2377 Query 71881 ATCCGCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAA 71940 ||||||||||| ||| || |||||||| || |||||||| |||||| | ||||||||| Sbjct 2376 ATCCGCTTCTACGTCAGCTTCGCCTGCTCCTTCGCCTTTGCCGAACGCAAACTGATGGAA 2317 Query 71941 GGCAACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACC 72000 ||||||||||| || || ||||||||||| |||||||| ||||| |||||||||||| Sbjct 2316 GGCAACGCCAAAATTATCCGCCTGATCGCCCGCGATGAAGCGCTGCACCTGACCGGCACC 2257 Query 72001 CAGCACATGATCATGTTAATGAAGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTT 72060 ||||| ||| | | | || ||||| |||||| | || ||||||||||||| Sbjct 2256 CAGCATATGCTGAACCTGCTGCGCTCCGGCAGCGACGATCCGGAAATGGCGGAAATCGCC 2197 Query 72061 AAAGAGTGTGAAGCA-GAAACATACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGA 72119 ||||||| ||||| || || | || || | || || ||||||||||||| Sbjct 2196 GAAGAGTG-CAAGCAGGAGTGCTATGACCTGTTCGTGCTGGCGGCGCAGCAGGAGAAAGA 2138 Query 72120 CTGGGCGAACTATCTATTCCAGGACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTG 72179 |||||| |||| || |||| ||||| ||||||||||| ||||| ||||| || | || Sbjct 2137 GTGGGCGGACTACCTGTTCCGCGACGGCTCGATGATCGGCCTGAATAAAGATATTCTCTG 2078 Query 72180 CCAGTACATCGAATACATCACCAACATCCGTATTCGCGCCATCGGTTACGATGACATCTA 72239 ||||||| |||| ||||||||||| ||||| || | || | || || |||| Sbjct 2077 CCAGTACGTCGAGTACATCACCAATATCCGCATGCAGGCGGTGGGCCTCG-----ATCT- 2024 Query 72240 CGCCGGTGTCAAA---GCT--AACCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGAC 72294 ||| || || | ||| ||||| ||||||||||||||| ||||| |||| || ||| Sbjct 2023 -GCC-GTTCCAGACCCGCTCCAACCCGATCCCATGGATCAACACCTGGCTGGTCTCCGAC 1966 Query 72295 AACGTGCAAGTCGCTCCACAGGAAGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGAC 72354 ||||| || || || || |||||||||||||| ||||||||||| ||||| ||||| || Sbjct 1965 AACGTTCAGGTGGCGCCGCAGGAAGTGGAAGTCAGTTCTTATCTCGTCGGCCAGATCGAT 1906 Query 72355 TCGAAAGTGGACGCCAACGATTTCGACGATTTCCAACTGTAA 72396 || |||| || ||| ||||| | | ||||| |||||| Sbjct 1905 TCTGAAGTCGATGCCGACGATCTGAGTAACTTCCAGCTGTAA 1864 >seq4256 Length=25676 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 10071 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 10012 Query 165254 GCTAGACCAGCCAAA 165268 | ||| ||||||| Sbjct 10011 GTCAGAGGAGCCAAA 9997 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 11835 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 11894 Query 165254 GCTAGACCAGCCAAA 165268 | ||| ||||||| Sbjct 11895 GTCAGAGGAGCCAAA 11909 >seq2048 Length=13079 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 4085 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 4026 Query 165254 GCTAGACCAGCCAAA 165268 | ||| ||||||| Sbjct 4025 GTCAGAGGAGCCAAA 4011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867034769640480