Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2516 114 1e-20 seq2261 93.3 5e-14 seq501 87.8 2e-12 seq24971 84.2 2e-11 seq46 84.2 2e-11 >seq2516 Length=21774 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 61366 ATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACGGCATAGCCAGAAACA 61425 || ||||||||||| || || || || |||| || || || || || ||||| |||||| Sbjct 1933 ATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCGTACCGCGTAGCCGGAAACA 1874 Query 61426 CGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTCTAAAGTTTCTTTA 61485 ||||| |||||||| ||||||||||| ||||| | ||| || || | ||||| | Sbjct 1873 CGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCCAGCAGGGTTTCGCGA 1814 Query 61486 GACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAAC 61523 ||||||||| ||||||| ||||| || ||||| || Sbjct 1813 CGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGAC 1776 >seq2261 Length=3986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61350 AGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAAC 61409 |||||| || || | |||||| || |||| || ||| || || | |||||||| || Sbjct 675 AGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAACGTAC 616 Query 61410 GGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATC 61469 ||| |||||||| ||||| || |||||||| ||||||||||| || | || | || || Sbjct 615 GGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTC 556 Query 61470 TTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTC 61520 | |||| || ||||||||||||| ||||| |||||||| Sbjct 555 GAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTC 505 >seq501 Length=12468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 74606 ATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTA 74665 |||||||| |||| || ||||| ||||| || ||| |||||||||||||||| ||||||| Sbjct 4859 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTA 4800 Query 74666 ACCAATTGAGCTATAGGGCC 74685 ||| | ||||||| ||||| Sbjct 4799 ACC-ACTGAGCTAAGGGGCC 4781 >seq24971 Length=330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 74609 TGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAACC 74668 ||||| ||||| ||||||||||||| | ||| || ||||||||||| | |||||||||| Sbjct 71 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 12 Query 74669 AATTGAGCTAT 74679 || |||||||| Sbjct 11 AACTGAGCTAT 1 >seq46 Length=971285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 |||||||| || |||| |||||||| ||||| ||||||| ||||| |||||||||| Sbjct 428486 TGGTGCCGCTTCCCGGAATCGAACCGAGGACCCCATCATTACGAATGATGTGCTCTACCA 428427 Query 72164 ACTGAGCTAAACCGGC 72179 ||||||||||| |||| Sbjct 428426 ACTGAGCTAAAGCGGC 428411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554159602697120