Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq11225 217 4e-52 seq4 203 9e-48 seq40 150 5e-32 seq4750 113 1e-20 seq12700 107 6e-19 seq360 91.5 4e-14 >seq11225 Length=5908 Score = 217 bits (240), Expect = 4e-52 Identities = 235/307 (77%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||||||| |||||| || |||||||| | | ||||| | || |||| || || Sbjct 5013 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC---CACTCGCGGGT 5069 Query 30145 TCTGAGTGAACCCTCGACGTA-CAGTTGCTGACCCTTCTTTACG-TGCTGCCCGACGATC 30202 | ||| | || |||||||| || | ||| ||||| | | | || || |||| Sbjct 5070 GCGGAGAGTGCCTTCGACGTAGCACTGGCT--CCCTTTTCGCAGATACTCACCCGCGATT 5127 Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 5128 TCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCG 5187 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 |||||||| || |||||||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 5188 GTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCG 5247 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || || | ||||| ||||||||| || ||| ||||||| || ||||| |||||||| Sbjct 5248 TTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTG 5307 Query 30383 ACGCCTC 30389 ||||||| Sbjct 5308 ACGCCTC 5314 >seq4 Length=38681 Score = 203 bits (224), Expect = 9e-48 Identities = 501/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Minus Query 1072 TGGGAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCC----ATT--CTGGTTCGTGTTC 1125 ||||| ||||| ||||||| || || |||| || | ||| |||| | | ||| Sbjct 29838 TGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTATCTGGGTGGCGTTT 29779 Query 1126 GGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGC 1185 |||||||| || | ||||| || || ||||| || |||| || |||| | || ||| Sbjct 29778 GGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGC 29719 Query 1186 TGGAAGACCAGGCAGATCGATAGTCG-ATCGGCCAAGATGACCAACAAAGACCTAATCAA 1244 |||||| | |||||| || || || | || ||| || ||||| | | | | Sbjct 29718 TGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGC-ACAAACAAGCAGCAGCTGCA 29660 Query 1245 GCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCT 1304 | |||||| | ||||||||||||||| ||||||| | ||||| || || || || | Sbjct 29659 GAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGAT 29600 Query 1305 GTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCGATGCCGCAATGGC 1364 ||||| | || || || || || ||| || ||||| || | || ||| Sbjct 29599 CTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAA 29540 Query 1365 ACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCGGCGTTGACCCGTC 1424 || || || || | | | ||| ||||| || || |||||||||| |||||| | Sbjct 29539 GCGGGTGGTTACCGCCGGGCAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGC 29480 Query 1425 GTGGTCAGGCGATGACGAATTTGCGATCTATATGCGGCAGGGGCTGCATAGCAAGCTGAT 1484 || || || | ||| || | ||| || |||||||||||||||| ||||| || | Sbjct 29479 GTATTCCGGAGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCT 29420 Query 1485 CGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCAGCGTATTGCCCAGCTGGA 1544 | || | | ||| | ||||| | | |||||| |||| || ||| | | || Sbjct 29419 CTGGACCGGCAACAAGACCACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGA 29360 Query 1545 AGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCAT--TGT- 1601 |||||||||| |||| |||||||| ||| ||||||| || || ||||| || | || Sbjct 29359 AGACCAGTACCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTC 29300 Query 1602 CAGCGCGGCTCGAGCAATGGGGC-GCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCAA 1660 || || | || || |||||| | | ||| ||| | | |||||| || | ||| | Sbjct 29299 CATCG-GTGACG-GC--TGGGGCAGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGA 29244 Query 1661 GCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATG-AAGGAATGGCTC 1719 |||||| ||||| || ||||| || ||||| | ||| | || ||| ||||| Sbjct 29243 CCGATCCCCAGATGCTAAATAAGCGCGGAGAGATGTTCAAC-AGCTGCAAGACGTGGCTG 29185 Query 1720 AAGGCTGGCGGCGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCTGAGTAT 1779 ||| ||||||| ||| |||||||| |||| || | || | || ||| | ||||| Sbjct 29184 AAGCTAGGCGGCGCGCTGGACGACCAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTAC 29125 Query 1780 CGCGTCAAGCTCGACGGCAAGATCGT 1805 |||| | | |||||||||||||| Sbjct 29124 AAAGTCAGGGTGGACGGCAAGATCGT 29099 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 4937 GATTGCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTG-GTACGAGG 4995 ||||| || || || ||||| |||||| || ||| ||||||| | ||| |||| Sbjct 24681 GATTGTCGAACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTA-GAGG 24623 Query 4996 GCAACCTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACC 5055 |||||||||| || || |||| ||| || | || |||| || || | | Sbjct 24622 GCAACCTGCCAACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGC 24563 Query 5056 GCAAGCTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCAT 5115 || ||||||| ||||||| ||| |||||||| ||||||| || || || | | Sbjct 24562 GCTTGCTGAACTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCT 24503 Query 5116 GCGGCATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGC-GATGCTGAATGGCAAC 5174 |||| || || ||| | | | ||||||| | |||| ||| ||||| ||||| Sbjct 24502 GCGGGATGCTGGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGAT-CTGAACGGCAAT 24444 Query 5175 ACCGCAGGTTTCCGCCTGTCTGAGTCGCGTGCATTCATGGAAGCAATGAACCAG 5228 || || | ||||| ||||| || ||||||||||| |||| ||||||||| Sbjct 24443 ACTGCTGAATTCCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAG 24390 >seq40 Length=14228 Score = 150 bits (166), Expect = 5e-32 Identities = 300/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Plus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 5974 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 6033 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 || ||||| ||||| || || || || | |||||| ||||| |||||||| || Sbjct 6034 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 6093 Query 31354 GGTG--TTC--------CGC-------------TT-------GCACTCGGCCATGTACTC 31383 |||| ||| ||| || ||| || |||| |||| Sbjct 6094 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 6153 Query 31384 AGTCGCGCTGATGGCATGGCTGCGGTCCTTCCGATAGATCTTGCAGGTGCA---TTCGGT 31440 || ||| ||| | ||| |||||||||| || || ||| ||| ||||| ||| | Sbjct 6154 GGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATT 6213 Query 31441 TCCCTGCTGGTCCATTGAGAATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCG 31500 |||||| || || ||||| ||||| ||||| |||| || |||||||| || Sbjct 6214 GTCCTGCT----CA-----AAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCG 6264 Query 31501 AGCCCAGCCATCCACGCCAACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTA 31560 | ||||||||| ||||| || || || ||||||||||| | ||| || ||||| ||||| Sbjct 6265 GGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTA 6324 Query 31561 CAACTCCTTGGTGAAGGGGTTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCAT 31620 | || || || | || || || |||||||| || |||||||||| |||| | Sbjct 6325 AATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAA 6384 Query 31621 CTGCGAATCATTGACCTGGCCCTTGAA 31647 ||||| ||| || | | ||| || || Sbjct 6385 CTGCGCATCGCTGGCATCGCCTTTAAA 6411 >seq4750 Length=4641 Score = 113 bits (124), Expect = 1e-20 Identities = 220/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 30067 CTGCAT-CTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCT 30125 |||||| |||||| |||||||||||||| || || || ||||| || | |||||| | Sbjct 4303 CTGCATTCTGCCC-TGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTT 4245 Query 30126 GCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGACCCTTCTTTA 30185 || |||| ||| ||| || ||| |||| ||| | ||| || ||| | Sbjct 4244 TTTCC---CACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCA 4188 Query 30186 CGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGC 30245 | || || |||| || || | ||||| || || || |||||||||||||| Sbjct 4187 GATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCT 4128 Query 30246 GCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGT 30305 || || ||| || || |||||||| |||| ||| || || || ||| ||| | Sbjct 4127 TTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGAT 4068 Query 30306 TGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAA 30365 |||| || ||||| ||||| || | ||||||||||| || || ||| | |||||| Sbjct 4067 TGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAA 4008 Query 30366 CCAGAATGACTTTGTTAACGCC 30387 ||| || ||||| || ||||| Sbjct 4007 CCAAGATCACTTTATTTACGCC 3986 >seq12700 Length=2524 Score = 107 bits (118), Expect = 6e-19 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253 ||| ||||||| || | ||| ||||| | | ||| |||||||||||||| ||| Sbjct 352 CCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACC 293 Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACC 30313 | ||||||||| |||||||| |||| |||||||| || || | | ||||||||| Sbjct 292 TTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACG 233 Query 30314 GCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATG 30373 || || ||||| |||| |||||| ||| || || ||| | || |||| ||| Sbjct 232 GCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGACCAATATG 173 Query 30374 ACTTTGTTAACGCC 30387 ||||||||||| || Sbjct 172 ACTTTGTTAACCCC 159 >seq360 Length=29890 Score = 91.5 bits (100), Expect = 4e-14 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 ||||||| || ||||| | ||| ||||||||||| ||||| |||| | | |||| Sbjct 27387 TCCGCCAGTTTGCCGAACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCG 27446 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 ||||||||||| |||| ||| || || || |||| ||||| || || ||| Sbjct 27447 GTCTGCTTGTCACGCCAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCA 27506 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 | ||||| ||||| ||||||||| || | || || || ||||| || ||||| Sbjct 27507 CTTGGCATGTAGCGTACTTCCGGGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTT 27566 Query 30383 ACGCCTCT 30390 |||||||| Sbjct 27567 ACGCCTCT 27574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145589582645488