Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq19415 221 3e-53 seq7329 179 8e-41 >seq19415 Length=1017 Score = 221 bits (244), Expect = 3e-53 Identities = 265/356 (74%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 2865 GTCCGCCTTCCCAGCGGCTCGTTCTGCAGCGCGTGCATGAGTGCCCAGGGCCAAGTCAGC 2924 ||| ||| | | || || ||||| ||||||||||| | || ||||| | | | ||| || Sbjct 646 GTCTGCCCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAACAGCGCCCACG-CTAGGTCGGC 704 Query 2925 ATGGCCCGGTGGTGCGCGAGCGTCCGGGCGGTGTAGGTCACCTGGCGCCCGCTCGGGGTG 2984 |||||||| | | | ||| |||| || |||| || | | ||||||| | |||| Sbjct 705 ATGGCCCG-TCTCGTCTGTGCGACCGGCCG-TGTAAGTGAACATGCGCCCGGAGGCGGTG 762 Query 2985 ATGGTTTTCTGGATCGCCAGCAGTGACTGCGTGAGGTCGGTCCAGCCGGCGTCGTACTCC 3044 || ||||| |||| |||| || |||||||| | || |||||||| || ||| ||||| Sbjct 763 ATTGTTTTGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCC 822 Query 3045 AGCCGTTCGTCATTGATTACGTCGTAGGCTTTCAGCACCAGCCGCGTTTTCACCTCGGGC 3104 |||| ||| ||||| |||||||| || ||||||||||| || ||||| || ||||| Sbjct 823 AGCCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGCACCAGGCGGGTTTTGACTTCGGGT 882 Query 3105 GAGTAGTTGAAGACGGTCACGCCGGGGAAGAACTGGCGCACCAGCTGTGCAACGCCGGTG 3164 |||||| |||| ||| | | ||||||||||| ||||||||| || ||||||| Sbjct 883 GAGTAGCTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAA 942 Query 3165 CCCATGCCGGTCGCATCCACGCCGATGTAGGTCACCCAATAGCGCTTGGTGATCTG 3220 ||| ||||||| ||| | ||||||||||||||||| ||||| ||| || ||| Sbjct 943 CCCGTGCCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCGTCTGGAGACCTG 998 Score = 82.4 bits (90), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 2259 TACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTACGGCTGGCATC 2318 ||||| || ||||| |||||||| ||| || |||| ||| || | |||| || | Sbjct 2 TACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGC 61 Query 2319 CATTCCGGCAGGCCGTAGATTTCCTGATCCGCGTCCGCCTCGCGCAGCTGGAACACCTCA 2378 || ||||||||||||||||||||||| | || |||||||||| ||| | | | | Sbjct 62 CACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAA 121 Query 2379 CCAGCGGGAAACTCATGCTC 2398 || | || ||| ||||| || Sbjct 122 CCGGGGGCAAATTCATGTTC 141 >seq7329 Length=1002 Score = 179 bits (198), Expect = 8e-41 Identities = 286/408 (70%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 1836 AGCTCGAAGACGTCGAAGCGGATCACTTCCTGCCCCAGCCACTCGTTGATCGCGGTCATG 1895 ||||| || | | ||| | || || || | |||||||||||||||| | || || Sbjct 412 AGCTCAAACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGC 353 Query 1896 CGCGTCTGCAGCGGGGCAAGCTCCATCGCCGCCCACACCGCCGCTGCGTCCCGGATCGAG 1955 | || ||||| ||| | ||||| | ||||||| ||| | || || ||||| | ||| Sbjct 352 CTCGCCTGCAACGGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC 293 Query 1956 CCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGCGGTACCCGTAACGCG 2015 ||||| ||||| |||||| ||||||||||||| || |||||| || | || ||||| Sbjct 292 CCAAAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCC 233 Query 2016 GCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGCCACC 2075 || |||| || || ||| | | | | ||||| | ||||||| ||| | ||||| ||| Sbjct 232 GCGAGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACC 173 Query 2076 TCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAACAGG 2135 || || |||||||| | ||| | |||||| ||||| || |||| || || |||||| Sbjct 172 TCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGG 113 Query 2136 TTCTTGAAATTGCCCGGCCCGCGCGACTGCCGCAGTGCGTCGCGTAACGCATCCACGTCC 2195 || || ||||| ||||| ||| | | ||||||| ||| | | || | |||| Sbjct 112 TTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCC 53 Query 2196 -ATGCCCTCGGGTTGGGGATCGGTCATGTAGAGGATGTAGCCGGCGTG 2242 | || || | | | ||||||||||| || ||| | ||||| || Sbjct 52 TCTTCCTTCTGCGCCGCG-TCGGTCATGTACAGAATGAAACCGGCATG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107122480973138