Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq1494 201 2e-46 seq9346 116 5e-21 >seq1494 Length=7401 Score = 201 bits (222), Expect = 2e-46 Identities = 325/465 (70%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 87330 CTGACAGAGCTCAGAGCGCACGCAGTCATCCTTCGTGAACTCTACAACCCCAATGCGGGA 87389 ||| ||||| | ||||||||||||||||| | ||||| || | || || | Sbjct 479 CTGGCAGAGGGCCGAGCGCACGCAGTCATCGGTGGTGAAACGCACGATGCCGAT-CATCT 537 Query 87390 CGTGGTACTGAAA-CGCTGTAGCGCGTCGGAAAGTCCACTTTGGACCCCTCTCGGTAAAT 87448 ||| | || ||| ||| ||||| ||| || ||| | || || || || | Sbjct 538 CGTCTTCCTCAAAACGCGCCAGCGCATCGCTCAGGCCAGATCTCACGCCAGAGGGCAAGT 597 Query 87449 CACACTGAGCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGA 87508 | ||||| | | || || || || || || ||||||||||| || || || || | | Sbjct 598 CGCACTGGGTGATATCGCCATTGACGATGACCGTCACGTTCTCCCCGAGGCGGGTTAAAA 657 Query 87509 ACATTTTCATCTGTGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCT 87568 |||| ||||| || || ||| ||||||||||| |||||||| || || ||||| || | Sbjct 658 ACATCTTCATTTGCGCTGCGGTCACGTTCTGGGCCTCGTCCAGAATCACCACCGCATTTT 717 Query 87569 CAAACGTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGC 87628 |||| || || || |||||||| ||||| || || ||||||||||| | ||||| | Sbjct 718 CAAAGGTACGTCCGCGCATATAGGCGAACGGCGCGATTTCCACCTTGCCGATTTCCGGAC 777 Query 87629 GCAAGCAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGC 87688 ||| ||||||||| | || | | | || || | |||| |||| | || | |||||| | Sbjct 778 GCAGGCAGTACTGCATAAAGGAAGCCCCCAGCCTTTTCACCAGCACATCGTAAACCGGTC 837 Query 87689 GGAAATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGG 87748 ||||||| || ||||| |||||| ||| || || || |||||||| || | || ||| Sbjct 838 GGAAATAGGGAGCGAACTTCTCGGCGATATCTCCCGGTAAGAAGCCGAGATCTTCGTCGG 897 Query 87749 ACTCTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTAT 87793 || | || ||||| || || || || | ||||| || |||| Sbjct 898 CCTGCAGAACGGGACGGGTAACAATAATTCTGTCCACATCCTTAT 942 >seq9346 Length=3494 Score = 116 bits (128), Expect = 5e-21 Identities = 227/325 (70%), Gaps = 13/325 (4%) Strand=Plus/Plus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 || || |||||||||||||||| ||||| || |||||| || ||| | | ||| | Sbjct 1616 CCGAAGCCACCTGCGCCGCGTTGTGTTTC-GTC--GAACTCTTCGACCAGCTCGAAGTGC 1672 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCC-ACGAGAGATTTTAAA 99978 || |||||||||| | || | ||| ||||| || ||||| ||| | ||| || || Sbjct 1673 GCCTGCACCACCGGTACCAGCACGAGTTGGGCAATGCGCTCGCCGACG-GCGATATTGAA 1731 Query 99979 CGCAGGTCCCTGAGTGTTACGGTTCCA-CAGTGAAACCATCAGCTGCCCGTTGTAGTCTG 100037 ||| |||| || | ||||||||| ||| || ||||||| || || | |||||| | Sbjct 1732 CGC-GGTC--TG---GCCACGGTTCCAGCAG-GACACCATCAACTCGCCCTGGTAGTCCG 1784 Query 100038 CATCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGC 100097 || || | ||| |||||| || || ||||| ||||||||||| ||||| ||||||| Sbjct 1785 AGTCGATCAGCCCCACCAGGTTGCCGAGGACGATGCCGTGTTTGTGGCCCAGGCCGGAGC 1844 Query 100098 GAGGGTGAATCAATCCCACGTAGTTTGGATTCTTCAGGAAGAATGCCAGACCGGTTGGAA 100157 | || | |||| || | | || | || | ||| | ||| ||||| |||| Sbjct 1845 GCGGCAGGATCAGCGCCGCCAGGCCCGGGTCGCCCACGTAGATCGACAGGCCGGTCGGAA 1904 Query 100158 TCAGTTTTGTTTCGCCAGGTTCGAG 100182 |||| | || | ||| ||||| || Sbjct 1905 TCAGAATGGTCTGGCCTGGTTCAAG 1929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698310322965080