Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2036 143 2e-28 seq7273 102 6e-16 seq2 86.0 5e-11 seq1 86.0 5e-11 >seq2036 Length=5547 Score = 143 bits (158), Expect = 2e-28 Identities = 455/697 (65%), Gaps = 14/697 (2%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || ||||| ||||| ||||||||||| | ||| | || | || || | || | || Sbjct 29 CGGTTATCGAAATCCTCACCTCCCAAGTGAGTGTCACCAGCGGTGGCCTTGACCTCAAAG 88 Query 282248 AGTCCATCTTCAA--GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | ||||| |||| | || |||||| ||||| || |||||||||| ||| || | Sbjct 89 ACACCATCCTCAATGGTGAGCAAAGAG--ACATCGAACGTACCACCACCCAAATCGAAGA 146 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | || | | || | | || || || ||||| || |||| || || |||| Sbjct 147 TGAGGATGTGACGCTCGGAGGTTGACTTCTTCTCGAGACCGTAGGCAATGGCGGCGGCAG 206 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 |||| || || || || | | || || || ||||| || ||||| || |||| Sbjct 207 TTGGCTCGTTGATGATACGCTGGACGTTGAGCTTGGCAATGACACCGGCATCCTTGGTGG 266 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCT 282484 |||| | || || ||||| || || || || ||||| || ||||| | ||| || | Sbjct 267 CTTGACGCTGGGAGTCGTTGAAGTAGGCTGGGACAGTGATGACGGCGT-TGTCGACGTTC 325 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 || || | || || || || | ||||| || | | ||| | || |||| Sbjct 326 TTGCCGAGGTAGGCTTCGGCAGTCTCCTTCATCTTGAGGAGCACCATGGCAGAGATTTCC 385 Query 282545 TCTGGAGAATATTGCTTGGATTCATT-TTGATATGATACTTCAAAATATGGTTTATTACC 282603 ||||| || | ||||| ||| |||| | |||| | ||| || | | Sbjct 386 TCTGGGGAGAAGGTCTTGGTCTCACCCTTGAACTCG-ACTTGGATGAGTGGCTTGT---C 441 Query 282604 AACATTA---ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATT 282660 | || || || || |||||||| | |||||||| || || || |||| | Sbjct 442 TTCCTTGGAGATGACCTTGAATGGCCAGTGCTTCATATCCGACTGCACGACAGAGTCACT 501 Query 282661 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGC 282720 || | | |||||| || || || || ||||| | ||| |||||||| || | ||| | Sbjct 502 GAACTTGCGACCAATCAAACGCTTGGCGTCAAAGACAGTGTTGGTTGGGTTCATGGCAAC 561 Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 || | ||||| ||||||||||| ||| | || || ||||| || | || || ||||| Sbjct 562 CTGGTTCTTGGCGGCATCTCCAATGAGACGCTCAGTGTCTGTGAAGGCGACGTACGATGG 621 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 ||| || | ||||| ||||| || ||||| || || || | |||||||||| || || Sbjct 622 AGTAGTTCTGTTACCCTGATCGTTGGCAATGATCTCGACACGATCATTTTGCCAAACTCC 681 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 ||||| | ||||| |||||||| || || ||| Sbjct 682 GACACACGAGTATGTTGTACCTAAATCGATTCCTATA 718 >seq7273 Length=4713 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 ||||| || |||| ||||| ||||||||||| || || |||| | ||||| |||||| Sbjct 525 AGACCGTAGGCAATGGCAGCTGCAGTTGGTTCGTTCATGATTCGCTGTACATTCAGACCA 466 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 ||||| | ||||| |||||||| || |||| ||||| ||||||||| | || || || Sbjct 465 GCAATAGTCCCTGCGTCTTTAGTAGCCTGTCGTTGTGCATCGTTAAAGTGCGCCGGCACT 406 Query 282461 GTAATAACGGC 282471 || || || || Sbjct 405 GTGATGACAGC 395 >seq2 Length=372010 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 86113 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 86172 |||||||| || ||||| |||||||||||||||||| | ||| | ||||| || Sbjct 293845 CCTAAACCATAGGCAAGGCTTGCTGCAGTTGGTTCATTGACTATACGTAATACATCCAAT 293904 Query 86173 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 86232 || || | ||| | | |||| | || || || | ||| |||||||||||| || || Sbjct 293905 CCGGCCAGTTTGCCGGCATCACGTGTAGCCTGACGCTGGCTGTCATTAAAATAAGCAGGA 293964 Query 86233 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAA 86267 |||||||| ||||| |||| ||| ||| ||| Sbjct 293965 ACAGTAATGACTGCCCGGTTAACTGGTGTTTTTAA 293999 >seq1 Length=380338 Score = 86.0 bits (94), Expect = 5e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 34259 GAAATTTCTACGGAATCTGTTCTCATATAAGTAATATATCCGCCTTCATATAATTTTTGT 34318 |||| | ||| ||||| || | |||||| ||||| | |||| |||||||||| ||||| Sbjct 259907 GAAAGATTTACAGAATCGGTACGCATATAGGTAATTTTACCGCTTTCATATAATCTTTGT 259966 Query 34319 GCTGTTTTCATGGTAGAATCAATA--GACATACCAAATTTTCTGTTGGCTTCTTGTTGCA 34376 || | ||| || | ||| || | ||||| ||| ||| ||||| ||||| | Sbjct 259967 GCAACCTGCATTGTTC--TGGATACGGAGAAACCAAGTTTCCTGGAAGCTTCCTGTTGTA 260024 Query 34377 ATGTAGAAGTAGTAAAGGGAGGAGCCGGAGATCTT 34411 |||||||||||||||| |||| || ||| |||| Sbjct 260025 ATGTAGAAGTAGTAAAAGGAGCTGCAGGATTTCTT 260059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739244573587302