Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq4092 253 3e-62 seq3869 100 4e-16 >seq4092 Length=20610 Score = 253 bits (280), Expect = 3e-62 Identities = 762/1156 (66%), Gaps = 23/1156 (2%) Strand=Plus/Plus Query 27885 TTCATGCATACCGATGTAACCGATACTAACAGATGCGCGACCGTTGTCAAATGCTTTCAT 27944 |||||| |||||||| || || | | || || ||||| ||||| | || | | || Sbjct 16669 TTCATGGATACCGATATAGCCCAGAGAAATGGACGCGCGGCCGTTTTTGAA-GATCTCGG 16727 Query 27945 -GATATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAG 28003 || ||||| || | ||||| || || || || || ||||| | || || ||||| | Sbjct 16728 AGACGTCGTCGTCGGCTTTCAGCCGCACGCCGCAGGCGCCTTCCATATACAGGATCGGCG 16787 Query 28004 CGACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGA 28063 | |||| || || || || ||| || | | || | ||||| |||| | | Sbjct 16788 CCACGCGAGCCTTCACTCCTTCCAGGCGGGCGATACGGGTCATCAGCGCTTTGCGCGCCA 16847 Query 28064 TTTCCATACGTTCTTCCAGAAGATCCCAGAAA-CGCATAGGATTGCCATTTGAATCAAGA 28122 | || || || ||||| || ||||||| || | || ||| || | || || Sbjct 16848 GCTGCAGGCGCTCGTCCAGCAGCGCCCAGAAGGCGGCTTC-ATCGCCTTTCGCTTCCAGG 16906 Query 28123 GCGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCA 28182 ||||| ||||||| ||| ||| ||| ||| || | ||| || || || ||||| || | Sbjct 16907 GCGATGCGCGGCAGGTTGAGACTGATCACGCCGAGGTTATTGCGTCCATCATGCACCTGC 16966 Query 28183 ACACCGTTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAA 28242 | ||||| |||| |||||| | ||| || ||||| ||||| || ||| ||| Sbjct 16967 TCGCCGTTCTCGTTTTCCCATACCCCGAGGAAGCTGCGGCAGCCCATCGGCGTTTT-AAA 17025 Query 28243 CTACCAG-TCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGC 28301 | ||| | | |||| || | || ||| ||| | || || ||||| ||||| || || Sbjct 17026 CGACCCGGTGACTTTCACCACCTGATCGTAGTTGAGGATATCCGGGTACATGCGCTTGCT 17085 Query 28302 AGCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAG-TTGT 28360 ||||| ||||| |||| ||||||||| || ||| || | || | | | || Sbjct 17086 GGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGGTC-GCCGAACTTATGGTTCA 17144 Query 28361 GTCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAA 28420 | ||||| | ||||| |||||||||||||| || | ||| | | | |||||| | Sbjct 17145 GGCCGTCGCGGATCGCGAACACCAGTTTCGGGAACACCGCGGTTTTGCGATTTTTACCGA 17204 Query 28421 GACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTAC 28480 | || || | || ||| || | | || ||||| || |||||||| || | Sbjct 17205 GGCCGGCAATGCGGTTGCGCAGAATCGACTGCTGGATCAGCCGCGATTCCCAGCTGGTGC 17264 Query 28481 CAAGACCAAAGCCGAAGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGA 28540 |||| || || |||||||| |||||| || || || || |||| ||||| ||||||| Sbjct 17265 CAAGGCCGAACCCGAAGGTGACGAACGGCGTCTGGCCGTTGGCGGTATGCAGTGTGTTGA 17324 Query 28541 CCTCATACTCCAGACCTTGCATAGCATCATAT-ACAGCTTTGCGAGTCTTTGCAATAGCA 28599 ||||||||||||| || | || || || || ||| || || || ||| Sbjct 17325 CCTCATACTCCAGCGACTGGAAGGCGTCGTAGCACTCTTTTTCG-GTACGGGCGCGGGCA 17383 Query 28600 TATTGCTGTTG--ATCTGGAATTTTCCAGTAACGAGCT-TCATCCAAGTGCTTTTCGTGT 28656 || || | | ||| || || | ||| | || | | | | ||||||| || Sbjct 17384 TA--GCCTTCGGCATCCGGGATCTGCCACTCTTCGGCGATTTTGCGA-TGCTTTT--TGA 17438 Query 28657 GTCATTT--TAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCAT 28714 | || | || |||| ||||||||||| || ||||| ||||| ||| | ||||| | Sbjct 17439 AGCTTTCGCTGACGAACGGCGCCAGCACTTCATCGATGCGGTTGATGGTGGTGCCGCCGT 17498 Query 28715 AAATGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGC 28774 |||| || || || || || |||||||| || || |||| || | |||||||| || Sbjct 17499 AAATATGGCTGGCGACCTGGGCGATGATCTGCGCCGTCACCGCGGTGGCGGTAGAGATAG 17558 Query 28775 TTTTCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAA 28834 ||||| | |||||| | || || ||||| | || || | ||| ||| |||| | Sbjct 17559 ACTTCGGCGGCTCGATCTCCGCGTTGCCCATCTTAAAGCCCTGGGTCAGCATGCCTTTCA 17618 Query 28835 CATCTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGT 28894 ||| |||| ||||||||| ||||| |||||||| || || ||||| || || || ||| Sbjct 17619 GATCGATCAGCATGCAGTTGAACATCGGGAAGAAGGGCGAGTAATCGAGGTCATGATAGT 17678 Query 28895 GAATCCAACCATTTTCGTGTGCTTGCATAACTTCAACAG---GCAGATAATGCTTGGCGA 28951 | ||| || ||||| || || || || | |||| | ||| |||| Sbjct 17679 GGATCATGCCGCGCTCGTGGGCCATCACCACATCGTGGGGCAGCAGGTGCTGCCGGGCGT 17738 Query 28952 AATGCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTT 29011 | ||||| |||||||| || | || ||||| || || || || || || ||| | Sbjct 17739 AGTGCTTGGCGACGATACCGGCCAGCAGGTCGCGCTGGGTCGGGATGACTTTACTGTCCT 17798 Query 29012 TGTTTGCATTTTCATT 29027 | || || ||||| || Sbjct 17799 TATTGGCGTTTTCGTT 17814 Score = 104 bits (114), Expect = 3e-17 Identities = 260/391 (66%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 27273 CACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCGGGGTTCCCCAAATAACCGCA 27332 ||| || |||||||||||||| || || | || | | ||| | || | ||||||||| Sbjct 16060 CACCTCTTCCTGCTTGCCGGCGTTGAACGGCCGCGCGTCCGGGCTGCCGAGATAACCGCA 16119 Query 27333 GACGCGACGAATAACGTTCATTTTGGTATCATCATGATTGCCGCACTTAGGACATTCATA 27392 || || || ||||| | || | || || || ||||| || || || | | Sbjct 16120 CACCCGGCGGGTAACGGAAACGCGGGCGGCGTCGTGGTTACCGCATTTCGGGCAGGTAAA 16179 Query 27393 TCCTTTAGATGTAGCAGT-GAATTCGCCGTGATAACCGCATTCAAAACAAACATCAACTG 27451 || || | || ||| | ||| |||||| | ||||||| || | || |||| | | Sbjct 16180 GCCCTT-GCTGGTGCACTCGAACTCGCCGGTAAAACCGCACTCGTAGCACTCATCGATCG 16238 Query 27452 GGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATAATCCCAAACATCTTCGAGAG 27511 | ||||||||||| || ||||| | | ||| |||||||| || ||||| || | Sbjct 16239 GCGTATTGGTCCCGTAGTACGGCACGTGCTGATAGCTGTAATCCCACACGTCTTCCAGCG 16298 Query 27512 CTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGAAATAAAACCACCAGAACTAA 27571 | || || |||| | |||||||| || || ||||| |||| || || || | Sbjct 16299 CCTTGAGGTTATGCTGGATATTCGGGTACTCGCCGTAGCAAATGAACCCCCCGTTGGCCA 16358 Query 27572 GCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGGATTTGTATTATGACGAACGT 27631 |||| | | || ||| ||||||||||| || ||||| || || | |||| Sbjct 16359 GCGGCGGGTACGGCGCTTCGAAATCGATCTTATCGTACGGGTTGACCTTCTTCTCCACGT 16418 Query 27632 CCAGATGGAAACTGTTGGTATAATAATCCTT 27662 | || ||||| |||||||| || ||| |||| Sbjct 16419 CGAGGTGGAAGCTGTTGGTGTAGTAA-CCTT 16448 >seq3869 Length=8584 Score = 100 bits (110), Expect = 4e-16 Identities = 267/406 (66%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 32812 TTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTG 32871 || ||||| || | |||||||||| ||| | | || || | || ||| |||| Sbjct 4360 TTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTG 4419 Query 32872 TTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCA 32931 || || ||||| || | |||| ||||| ||||||||||| || || | || || || Sbjct 4420 TTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCC 4479 Query 32932 GCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAG 32991 ||||| || || || |||||||| |||||| ||| ||||| ||||| || | || || Sbjct 4480 GCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAG 4539 Query 32992 AATGGGATAATACCAGTATGACGAA--CCTCGCCAGAACGAATTCTAGAGCCTTCAGCAC 33049 || || || || || || ||| | ||||| || || ||| || | Sbjct 4540 AACGGAATGCAGCCGGTGTG--GAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCGC 4597 Query 33050 GAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAAC 33109 |||| || | ||||| ||||| || || | || | | || | || || | | Sbjct 4598 GAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGC 4657 Query 33110 TAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAA 33169 | | ||| ||||| ||| ||| || || || | || ||| ||||| ||||| | Sbjct 4658 TGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGA 4717 Query 33170 ACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 |||||||||| || ||||| || || | || || || ||||| || Sbjct 4718 ACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAG 4763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710040582628720