Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_023689.1 Length=76260 Score E Sequences producing significant alignments: (Bits) Value seq177 197 7e-46 seq47 187 1e-42 seq11306 181 5e-41 seq19644 136 2e-27 >seq177 Length=203703 Score = 197 bits (218), Expect = 7e-46 Identities = 404/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66229 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66288 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66289 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66348 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66349 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66408 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66409 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66468 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66469 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66526 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 66527 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66586 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 66587 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66646 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 104023 Query 66647 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 66706 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 104024 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 104080 Query 66707 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66766 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 104081 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 104140 Query 66767 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66824 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 104141 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 104198 >seq47 Length=21181 Score = 187 bits (206), Expect = 1e-42 Identities = 446/666 (67%), Gaps = 19/666 (3%) Strand=Plus/Plus Query 66168 TGTGGACGTCATTCCCACCGGCTCTATCGCCCTGGACGGCGCTCTGGGCATCGGGGGGTA 66227 |||||| ||| |||||||||| | | ||||| ||| |||||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 66228 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66287 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66288 TCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGA 66347 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66348 GCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTG 66405 || | ||||| |||| || || | || || || || || |||||||||| || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG 15820 Query 66406 GTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66464 || | |||||||||||| ||||||||||| ||||||||| |||| || | || Sbjct 15821 -TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTC 15879 Query 66465 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 66524 ||| | | | | ||||||| ||||| || ||||| || |||| || || | Sbjct 15880 TGGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAAT 15939 Query 66525 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66584 ||||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| || Sbjct 15940 CGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGAT 15999 Query 66585 GCGCAAGCTCACCGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAG 66642 ||| ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16000 GCGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAG 16057 Query 66643 TTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGC 66699 | || ||| || ||| ||| | ||| |||| || ||||| || || || Sbjct 16058 ATCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGT 16111 Query 66700 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 66759 || || ||| |||||||||||| || || |||| | || ||||||| | | | ||| Sbjct 16112 AACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAA 16171 Query 66760 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCC 66819 || ||||| | | ||||||| | ||||| || || || || || |||||| | ||| Sbjct 16172 GAGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCC 16231 Query 66820 CCGCCG 66825 ||||| Sbjct 16232 GCGCCG 16237 >seq11306 Length=553 Score = 181 bits (200), Expect = 5e-41 Identities = 217/294 (74%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 66650 AGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66709 ||||||||||| | | || |||| || |||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 66710 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66769 |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 66770 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 66829 | || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 66830 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 66889 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 66890 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66943 || | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 263 >seq19644 Length=1527 Score = 136 bits (150), Expect = 2e-27 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 60634 CTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACC 60693 || || ||||||||||||||||| | ||| || |||| | | || || ||||||||| Sbjct 1174 CTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACC 1115 Query 60694 GTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTCGACGGCGAC 60747 ||| || | |||| || ||| | ||| | | | ||| |||||||| Sbjct 1114 ATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAGGACGGCGAT 1058 Query 60748 GCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCT 60806 || |||||||| |||| || |||||||||| ||||||| ||||||||| | Sbjct 1057 GCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTT 999 Query 60807 CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAA 60866 ||| ||| ||||||||||| ||| ||| || |||||||||| | || | Sbjct 998 GACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCG 939 Query 60867 GGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 60926 |||||| || ||||||||| |||||| ||||||| |||||||||||||| ||||| || Sbjct 938 CGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCG 879 Query 60927 GT 60928 || Sbjct 878 GT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243823291883487